CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Al_scaffold_0004_2305
(
Arabidopsis lyrata
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
Al_scaffold_0004_2305
T351849_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY70
M07399_2.00
Arabidopsis thaliana
HAAAGTCAACGNN
NNCGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY70_col
0.834
0.780
WRKY53
M01090_2.00
Arabidopsis thaliana
RGTCAACNN
NNGTTGACY
PBM
Sullivan et al.(2014)
pTH8245
0.819
0.576
WRKY55
M07392_2.00
Arabidopsis thaliana
HWAGTCAACGNH
DNCGTTGACTWD
Dap-seq
OMalley et al.(2016)
WRKY55_col_a
0.815
0.576
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0004_2305
WRKY
152
212
EDRYAWRKYGQKEILNTTFPRSYFRCTHKPTQGCKATKQVQKKEQDPEMFQITYIGYHTCT
Links
Other
WRKY
family TFs
Other
Arabidopsis lyrata
TFs
409 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy