CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZAP1
(
Arabidopsis thaliana
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
AT2G04880
T351908_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
(Direct)
(Direct)
ZAP1
M02726_2.00
Arabidopsis thaliana
DRCKCGGTCAA
TTGACCGMGYH
SELEX
Mathelier et al.(2014)
MA0589.1
(Direct)
(Direct)
ZAP1
M11463_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_01
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY3
M07381_2.00
Arabidopsis thaliana
MAWAGTCAAMR
YKTTGACTWTK
Dap-seq
OMalley et al.(2016)
WRKY3_col_a
0.849
0.661
WRKY2
M02567_2.00
Arabidopsis thaliana
BRGTCAAM
KTTGACYV
PBM
Weirauch et al.(2014)
pTH8832
0.843
0.687
WRKY20
M07414_2.00
Arabidopsis thaliana
HHHRGTCAAMGNH
DNCKTTGACYDDD
Dap-seq
OMalley et al.(2016)
WRKY20_col_a
0.841
0.722
Q40090_IPOBA
M11466_2.00
Ipomoea batatas
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPF1_Q2
0.836
0.696
WRKY33
M02554_2.00
Arabidopsis thaliana
NNRGTCHDNN
NNHDGACYNN
PBM
Weirauch et al.(2014)
pTH8183
0.833
0.704
WRKY33
M07391_2.00
Arabidopsis thaliana
HWWAGTCAAMD
HKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY33_col_a
0.833
0.704
PK05432.1
M01324_2.00
Cannabis sativa
NNRGTCARH
DYTGACYNN
PBM
Lambert et al.(2019)
pTH11342
0.832
0.661
WRKY26
M07418_2.00
Arabidopsis thaliana
MWAAGTCAACGNH
DNCGTTGACTWWK
Dap-seq
OMalley et al.(2016)
WRKY26_col_a
0.828
0.643
WRKY26
M07419_2.00
Arabidopsis thaliana
HMWAGTCAAMR
YKTTGACTWKD
Dap-seq
OMalley et al.(2016)
WRKY26_colamp_a
0.828
0.643
WRKY25
M02552_2.00
Arabidopsis thaliana
YRGTCAAM
KTTGACYR
PBM
Weirauch et al.(2014)
pTH8810
0.820
0.574
WRKY25
M07387_2.00
Arabidopsis thaliana
HWWRGTCAAMR
YKTTGACYWWD
Dap-seq
OMalley et al.(2016)
WRKY25_col_a
0.820
0.574
WRKY25
M07388_2.00
Arabidopsis thaliana
NNNHWRGTCAACRNH
DNYGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY25_colamp_a
0.820
0.574
For this family, TFs with SR scores >
0.808
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00982_2.00
WRKY
142
199
NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHD
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G04880.1
WRKY
111
167
EDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHP
AT2G04880.1
WRKY
307
364
NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHD
AT2G04880.2
WRKY
111
167
EDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHP
AT2G04880.2
WRKY
283
340
NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHD
Links
Other
WRKY
family TFs
Other
Arabidopsis thaliana
TFs
748 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy