CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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WRKY18
(
Arabidopsis thaliana
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
AT4G31800
T351945_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY18
M00900_2.00
Arabidopsis thaliana
NVGTCNN
NNGACBN
PBM
Franco-Zorrilla et al.(2014)
WRKY18
(Direct)
(Direct)
WRKY18
M02560_2.00
Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7360
(Direct)
(Direct)
WRKY18
M07416_2.00
Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN
Dap-seq
OMalley et al.(2016)
WRKY18_col_a
(Direct)
(Direct)
WRKY18
M07417_2.00
Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN
Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a
(Direct)
(Direct)
WRKY18
M11465_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY18_Q2
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY60
M02551_2.00
Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN
PBM
Weirauch et al.(2014)
pTH7379
0.881
0.898
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN
NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.862
0.831
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.862
0.831
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.862
0.831
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.809
0.648
For this family, TFs with SR scores >
0.808
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00900_2.00
WRKY
176
234
KDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHL
M02560_2.00
WRKY
52
110
KDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHL
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G31800.1
WRKY
176
234
KDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHL
AT4G31800.2
WRKY
111
169
KDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHL
AT4G31800.3
WRKY
176
229
KDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVIYTHRVYCIYSFICNC
Links
Other
WRKY
family TFs
Other
Arabidopsis thaliana
TFs
458 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy