e_gw1.158.71.1 (Physcomitrella patens)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 e_gw1.158.71.1 T355632_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY6
M07377_2.00
Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG

CGTTGACYNDNDHNDNNNH
Dap-seq
OMalley et al.(2016)
WRKY6_col_a
0.882 0.898
WRKY6
M07378_2.00
Arabidopsis thaliana
NNHNWRGTCAACKNH

DNMGTTGACYWNDNN
Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a
0.882 0.898
WRKY31
M07408_2.00
Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG

CGTTGACYHNNNNNDNNNN
Dap-seq
OMalley et al.(2016)
WRKY31_col_a
0.881 0.898
WRKY31
M07409_2.00
Arabidopsis thaliana
NHWRGTCAACKNH

DNMGTTGACYWDN
Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a
0.881 0.898
WRKY42
M07404_2.00
Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN

NNDNNHNNNNHGTTGACYWHN
Dap-seq
OMalley et al.(2016)
WRKY42_col_a
0.879 0.881
WRKY42
M07405_2.00
Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD

HHNDNMGTTGACYWNNNHND
Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a
0.879 0.881
WRKY47
M00732_2.00
Arabidopsis thaliana
NNRGTCAACKN

NMGTTGACYNN
PBM
Chang et al.(2013)
pTH7913
0.878 0.881
WRKY47
M07402_2.00
Arabidopsis thaliana
WRGTCAAMGNHVDK

MHBDNCKTTGACYW
Dap-seq
OMalley et al.(2016)
WRKY47_col_a
0.878 0.881
WRKY47
M07403_2.00
Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN

NNNNDNMGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a
0.878 0.881
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN

NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.814 0.610
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR

YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.814 0.610
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH

DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.814 0.610
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN

NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.814 0.610
WRKY60
M02551_2.00
Arabidopsis thaliana
NYGGTCAAMNN

NNKTTGACCRN
PBM
Weirauch et al.(2014)
pTH7379
0.814 0.627
WRKY18
M02560_2.00
Arabidopsis thaliana
NNRGTCAANN

NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7360
0.812 0.661
WRKY18
M00900_2.00
Arabidopsis thaliana
NVGTCNN

NNGACBN
PBM
Franco-Zorrilla et al.(2014)
WRKY18
0.812 0.661
WRKY18
M07416_2.00
Arabidopsis thaliana
NNHRGTCAASR

YSTTGACYDNN
Dap-seq
OMalley et al.(2016)
WRKY18_col_a
0.812 0.661
WRKY18
M07417_2.00
Arabidopsis thaliana
NNNHWAGTCAANR

YNTTGACTWDNNN
Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a
0.812 0.661
WRKY18
M11465_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY18_Q2
0.812 0.661
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.158.71.1 WRKY 2 60

Links

Other WRKY family TFs
Other Physcomitrella patens TFs

757 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_32964 Aegilops tauschii F775_32964 N 0.000
BRADI1G24940 Brachypodium distachyon BRADI1G24940 N 0.000
MLOC_71715 Hordeum vulgare MLOC_71715 N 0.000
LPERR07G15880 Leersia perrieri LPERR07G15880 N 0.000
OBART07G18420 Oryza barthii OBART07G18420 N 0.000
OB07G24200 Oryza brachyantha OB07G24200 N 0.000
ORGLA07G0148500 Oryza glaberrima ORGLA07G0148500 N 0.000
OGLUM07G18220 Oryza glumaepatula OGLUM07G18220 N 0.000
BGIOSGA025935 Oryza indica BGIOSGA025935 N 0.000
OLONG_006976 Oryza longistaminata OLONG_006976 N 0.000
OMERI07G15310 Oryza meridionalis OMERI07G15310 N 0.000
ONIVA07G16850 Oryza nivara ONIVA07G16850 N 0.000
OPUNC07G17320 Oryza punctata OPUNC07G17320 N 0.000
ORUFI07G19160 Oryza rufipogon ORUFI07G19160 N 0.000
OS07G0557500 Oryza sativa OS07G0557500 N 0.000
Pavir.J31665 Panicum virgatum Pavir.J31665 N 0.000
Pavir.Bb03053 Panicum virgatum Pavir.Bb03053 N 0.000
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I 0.000
Si029184m.g Setaria italica Si029184m.g N 0.000
Sb02g036200 Sorghum bicolor Sb02g036200 N 0.000
Traes_2AS_E9BB50170 Triticum aestivum Traes_2AS_E9BB50170 N 0.000
Traes_2BS_3ADAEBB61 Triticum aestivum Traes_2BS_3ADAEBB61 N 0.000
Traes_2DS_9DC4D07BB Triticum aestivum Traes_2DS_9DC4D07BB N 0.000
Traes_6BL_7462E6F9B Triticum aestivum Traes_6BL_7462E6F9B I 0.000
GRMZM2G032071 Zea mays GRMZM2G032071 N 0.000
GRMZM2G108272 Zea mays GRMZM2G108272 N 0.000
GRMZM2G415012 Zea mays GRMZM2G415012 N 0.000