Cagra.0050s0059 (Capsella grandiflora)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Cagra.0050s0059 T355865_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY46
M07395_2.00
Arabidopsis thaliana
VAAAGTCAAMG

CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY46_col_a
0.889 0.915
WRKY46
M07396_2.00
Arabidopsis thaliana
HRAAGTCAACG

CGTTGACTTYD
Dap-seq
OMalley et al.(2016)
WRKY46_colamp_a
0.889 0.915
WRKY55
M07392_2.00
Arabidopsis thaliana
HWAGTCAACGNH

DNCGTTGACTWD
Dap-seq
OMalley et al.(2016)
WRKY55_col_a
0.816 0.661
WRKY70
M07399_2.00
Arabidopsis thaliana
HAAAGTCAACGNN

NNCGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY70_col
0.815 0.559
WRKY53
M01090_2.00
Arabidopsis thaliana
RGTCAACNN

NNGTTGACY
PBM
Sullivan et al.(2014)
pTH8245
0.811 0.644
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0050s0059.1.p WRKY 106 166

Links

Other WRKY family TFs
Other Capsella grandiflora TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD27 Arabidopsis thaliana AT3G47870 N 0.000
Bo1g072490 Brassica oleracea Bo1g072490 N 0.000
Bo3g135950 Brassica oleracea Bo3g135950 N 0.000
Bra018102 Brassica rapa Bra018102 N 0.000
SCP Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001275 N 0.000
Bostr.18473s0162 Boechera stricta Bostr.18473s0162 N 0.000
Carubv10018376m.g Capsella rubella Carubv10018376m.g N 0.000
evm.TU.supercontig_17.185 Carica papaya evm.TU.supercontig_17.185 N 0.000
Thhalv10011007m.g Eutrema salsugineum Thhalv10011007m.g N 0.000