Lus10023615.g (Linum usitatissimum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Lus10023615.g T356423_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WRKY6
M07377_2.00
Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG

CGTTGACYNDNDHNDNNNH
Dap-seq
OMalley et al.(2016)
WRKY6_col_a
0.880 0.881
WRKY6
M07378_2.00
Arabidopsis thaliana
NNHNWRGTCAACKNH

DNMGTTGACYWNDNN
Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a
0.880 0.881
WRKY31
M07408_2.00
Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG

CGTTGACYHNNNNNDNNNN
Dap-seq
OMalley et al.(2016)
WRKY31_col_a
0.878 0.881
WRKY31
M07409_2.00
Arabidopsis thaliana
NHWRGTCAACKNH

DNMGTTGACYWDN
Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a
0.878 0.881
WRKY42
M07404_2.00
Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN

NNDNNHNNNNHGTTGACYWHN
Dap-seq
OMalley et al.(2016)
WRKY42_col_a
0.876 0.864
WRKY42
M07405_2.00
Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD

HHNDNMGTTGACYWNNNHND
Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a
0.876 0.864
WRKY47
M00732_2.00
Arabidopsis thaliana
NNRGTCAACKN

NMGTTGACYNN
PBM
Chang et al.(2013)
pTH7913
0.874 0.864
WRKY47
M07402_2.00
Arabidopsis thaliana
WRGTCAAMGNHVDK

MHBDNCKTTGACYW
Dap-seq
OMalley et al.(2016)
WRKY47_col_a
0.874 0.864
WRKY47
M07403_2.00
Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN

NNNNDNMGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a
0.874 0.864
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN

NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.821 0.610
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR

YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.821 0.610
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH

DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.821 0.610
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN

NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.821 0.610
WRKY60
M02551_2.00
Arabidopsis thaliana
NYGGTCAAMNN

NNKTTGACCRN
PBM
Weirauch et al.(2014)
pTH7379
0.814 0.644
WRKY18
M02560_2.00
Arabidopsis thaliana
NNRGTCAANN

NNTTGACYNN
PBM
Weirauch et al.(2014)
pTH7360
0.810 0.644
WRKY18
M00900_2.00
Arabidopsis thaliana
NVGTCNN

NNGACBN
PBM
Franco-Zorrilla et al.(2014)
WRKY18
0.810 0.644
WRKY18
M07416_2.00
Arabidopsis thaliana
NNHRGTCAASR

YSTTGACYDNN
Dap-seq
OMalley et al.(2016)
WRKY18_col_a
0.810 0.644
WRKY18
M07417_2.00
Arabidopsis thaliana
NNNHWAGTCAANR

YNTTGACTWDNNN
Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a
0.810 0.644
WRKY18
M11465_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRKY18_Q2
0.810 0.644
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10023615 WRKY 198 256

Links

Other WRKY family TFs
Other Linum usitatissimum TFs

787 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29827.m002555 Ricinus communis 29827.m002555 I 0.000
AMTR_s00149p00068500 Amborella trichopoda AMTR_s00149p00068500 I 0.000
anac071 Arabidopsis lyrata Al_scaffold_0007_2395 I 0.000
anac071 Arabidopsis thaliana AT4G17980 D 0.000
anac096 Arabidopsis thaliana AT5G46590 D 0.000
anac096 Arabidopsis lyrata fgenesh2_kg.8__135__AT5G46590.1 I 0.000
BGIOSGA033482 Oryza indica BGIOSGA033482 I 0.000
Bo2g130240 Brassica oleracea Bo2g130240 I 0.000
Bo7g075540 Brassica oleracea Bo7g075540 I 0.000
Bo7g105630 Brassica oleracea Bo7g105630 I 0.000
Bostr.30275s0267 Boechera stricta Bostr.30275s0267 I 0.000
Bostr.4485s0006 Boechera stricta Bostr.4485s0006 I 0.000
Bra012626 Brassica rapa Bra012626 I 0.000
Bra013272 Brassica rapa Bra013272 I 0.000
Bra022046 Brassica rapa Bra022046 I 0.000
Bra025012 Brassica rapa Bra025012 I 0.000
BRADI3G33957 Brachypodium distachyon BRADI3G33957 I 0.000
Cagra.0569s0030 Capsella grandiflora Cagra.0569s0030 I 0.000
Cagra.3356s0092 Capsella grandiflora Cagra.3356s0092 I 0.000
Carubv10007390m.g Capsella rubella Carubv10007390m.g I 0.000
Carubv10028284m.g Capsella rubella Carubv10028284m.g I 0.000
cassava22941.valid.m1 Manihot esculenta cassava22941.valid.m1 I 0.000
Ca_02274 Cicer arietinum Ca_02274 I 0.000
Ca_12837 Cicer arietinum Ca_12837 I 0.000
chr2.CM0021.650.nc Lotus japonicus chr2.CM0021.650.nc I 0.000
Ciclev10031966m.g Citrus clementina Ciclev10031966m.g I 0.000
Cla016424 Citrullus lanatus Cla016424 I 0.000
Cucsa.313350 Cucumis sativus Cucsa.313350 I 0.000
Eucgr.D02182 Eucalyptus grandis Eucgr.D02182 I 0.000
Eucgr.E00298 Eucalyptus grandis Eucgr.E00298 I 0.000
evm.TU.supercontig_90.52 Carica papaya evm.TU.supercontig_90.52 I 0.000
F775_28577 Aegilops tauschii F775_28577 I 0.000
gene10722-v1.0-hybrid Fragaria vesca gene10722-v1.0-hybrid I 0.000
GLYMA05G23840 Glycine max GLYMA05G23840 I 0.000
GLYMA17G16500 Glycine max GLYMA17G16500 I 0.000
Gorai.003G180600 Gossypium raimondii Gorai.003G180600 I 0.000
Gorai.004G186700 Gossypium raimondii Gorai.004G186700 I 0.000
Gorai.007G031300 Gossypium raimondii Gorai.007G031300 I 0.000
Gorai.008G227800 Gossypium raimondii Gorai.008G227800 I 0.000
GRMZM2G082709 Zea mays GRMZM2G082709 I 0.000
GSMUA_Achr5G03360_001 Musa acuminata GSMUA_Achr5G03360_001 I 0.000
LPERR10G15090 Leersia perrieri LPERR10G15090 I 0.000
Lus10030978.g Linum usitatissimum Lus10030978.g I 0.000
Lus10035373.g Linum usitatissimum Lus10035373.g I 0.000
MDP0000119446 Malus domestica MDP0000119446 I 0.000
MDP0000936269 Malus domestica MDP0000936269 I 0.000
MLOC_58950 Hordeum vulgare MLOC_58950 I 0.000
MTR_5g014300 Medicago truncatula MTR_5g014300 I 0.000
OB10G26350 Oryza brachyantha OB10G26350 I 0.000
OBART10G19230 Oryza barthii OBART10G19230 I 0.000
OGLUM10G19330 Oryza glumaepatula OGLUM10G19330 I 0.000
OLONG_018722 Oryza longistaminata OLONG_018722 I 0.000
OMERI07G08100 Oryza meridionalis OMERI07G08100 I 0.000
ONIVA10G21790 Oryza nivara ONIVA10G21790 I 0.000
OPUNC10G17630 Oryza punctata OPUNC10G17630 I 0.000
orange1.1g018835m.g Citrus sinensis orange1.1g018835m.g I 0.000
ORGLA10G0144100 Oryza glaberrima ORGLA10G0144100 I 0.000
ORUFI10G20470 Oryza rufipogon ORUFI10G20470 I 0.000
Pavir.Ia03491 Panicum virgatum Pavir.Ia03491 I 0.000
PGSC0003DMG400017505 Solanum tuberosum PGSC0003DMG400017505 I 0.000
PK00339.1 Cannabis sativa PK00339.1 I 0.000
Pm023277 Prunus mume Pm023277 I 0.000
POPTR_0001s02710 Populus trichocarpa POPTR_0001s02710 I 0.000
POPTR_0003s08830 Populus trichocarpa POPTR_0003s08830 I 0.000
PRUPE_ppa007828mg Prunus persica PRUPE_ppa007828mg I 0.000
SapurV1A.0846s0080 Salix purpurea SapurV1A.0846s0080 I 0.000
SapurV1A.0900s0060 Salix purpurea SapurV1A.0900s0060 I 0.000
Sb01g028450 Sorghum bicolor Sb01g028450 I 0.000
Si036301m.g Setaria italica Si036301m.g I 0.000
Solyc06g061080.2 Solanum lycopersicum Solyc06g061080.2 I 0.000
Solyc08g077110.2 Solanum lycopersicum Solyc08g077110.2 I 0.000
TCM_015749 Theobroma cacao TCM_015749 I 0.000
Thhalv10001200m.g Eutrema salsugineum Thhalv10001200m.g I 0.000
Thhalv10027064m.g Eutrema salsugineum Thhalv10027064m.g I 0.000
Traes_1AL_D6C49C3BC Triticum aestivum Traes_1AL_D6C49C3BC I 0.000
Traes_1BL_8925B27BC Triticum aestivum Traes_1BL_8925B27BC I 0.000
VIT_02s0012g01040 Vitis vinifera VIT_02s0012g01040 I 0.000