CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Eb03043
(
Panicum virgatum
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Pavir.Eb03043
T356754_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY24
M07426_2.00
Arabidopsis thaliana
NNNAWAGTCAACGN
NCGTTGACTWTNNN
Dap-seq
OMalley et al.(2016)
WRKY24_col_a
0.857
0.879
WRKY24
M07427_2.00
Arabidopsis thaliana
NAWAGTCAACGNH
DNCGTTGACTWTN
Dap-seq
OMalley et al.(2016)
WRKY24_colamp_a
0.857
0.879
WRKY75
M02562_2.00
Arabidopsis thaliana
NRGTCAAM
KTTGACYN
PBM
Weirauch et al.(2014)
pTH8821
0.852
0.793
WRKY75
M07420_2.00
Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY75_col_a
0.852
0.793
WRKY75
M07421_2.00
Arabidopsis thaliana
VAAAGTCAACRNH
DNYGTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY75_colamp_a
0.852
0.793
WRKY43
M02555_2.00
Arabidopsis thaliana
NRGTCAAHNN
NNDTTGACYN
PBM
Weirauch et al.(2014)
pTH7373
0.850
0.845
WRKY43
M07393_2.00
Arabidopsis thaliana
NNAAAGTCAACGNN
NNCGTTGACTTTNN
Dap-seq
OMalley et al.(2016)
WRKY43_col_a
0.850
0.845
WRKY43
M07394_2.00
Arabidopsis thaliana
NNNNAAAGTCAACGN
NCGTTGACTTTNNNN
Dap-seq
OMalley et al.(2016)
WRKY43_colamp_a
0.850
0.845
WRKY12
M00898_2.00
Arabidopsis thaliana
NHGGTCAACNN
NNGTTGACCDN
PBM
Franco-Zorrilla et al.(2014)
WRKY12
0.840
0.724
WRKY71
M07374_2.00
Arabidopsis thaliana
HAAAGTCAAMN
NKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY71_col_a
0.836
0.759
WRKY48
M02565_2.00
Arabidopsis thaliana
NNVGTCADNN
NNHTGACBNN
PBM
Weirauch et al.(2014)
pTH7552
0.835
0.741
WRKY28
M07406_2.00
Arabidopsis thaliana
HAAAGTCAAMNNH
DNNKTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY28_col_a
0.834
0.724
WRKY28
M07407_2.00
Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY28_colamp_a
0.834
0.724
WRKY8
M02564_2.00
Arabidopsis thaliana
NRGTCAAHN
NDTTGACYN
PBM
Weirauch et al.(2014)
pTH7554
0.834
0.707
WRKY8
M07428_2.00
Arabidopsis thaliana
NAAAAGTCAACRNHW
WDNYGTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY8_colamp_a
0.834
0.707
WRKY8
M07429_2.00
Arabidopsis thaliana
NNVAAAGTCAACRNH
DNYGTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY8_col
0.834
0.707
WRKY45
M00899_2.00
Arabidopsis thaliana
NNRGTCAAMGN
NCKTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY45
0.830
0.707
WRKY45
M07397_2.00
Arabidopsis thaliana
NAAAAGTCAAMD
HKTTGACTTTTN
Dap-seq
OMalley et al.(2016)
WRKY45_col_a
0.830
0.707
WRKY45
M07398_2.00
Arabidopsis thaliana
MAAAGTCAAMV
BKTTGACTTTK
Dap-seq
OMalley et al.(2016)
WRKY45_colamp_a
0.830
0.707
WRKY57
M02547_2.00
Arabidopsis thaliana
NNRGTCAAHN
NDTTGACYNN
PBM
Weirauch et al.(2014)
pTH7917
0.828
0.707
WRKY23
M02556_2.00
Arabidopsis thaliana
RGTCAACG
CGTTGACY
PBM
Weirauch et al.(2014)
pTH7387
0.824
0.724
WRKY23
M01089_2.00
Arabidopsis thaliana
NRGTCAAM
KTTGACYN
PBM
Sullivan et al.(2014)
pTH7671
0.824
0.724
fgenesh1_pg.C_Chr_11.0001000193
M02570_2.00
Ostreococcus tauri
NRGTCARNN
NNYTGACYN
PBM
Weirauch et al.(2014)
pTH9432
0.820
0.552
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.818
0.621
WRKY15
M02549_2.00
Arabidopsis thaliana
NRGTCAAMNN
NNKTTGACYN
PBM
Weirauch et al.(2014)
pTH7602
0.811
0.534
WRKY15
M07383_2.00
Arabidopsis thaliana
AAAAGTCAACKN
NMGTTGACTTTT
Dap-seq
OMalley et al.(2016)
WRKY15_colamp_a
0.811
0.534
WRKY15
M07384_2.00
Arabidopsis thaliana
NWAAGTCAACB
VGTTGACTTWN
Dap-seq
OMalley et al.(2016)
WRKY15_col_b
0.811
0.534
WRKY21
M02553_2.00
Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN
PBM
Weirauch et al.(2014)
pTH7422
0.810
0.483
WRKY21
M07389_2.00
Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a
0.810
0.483
WRKY21
M07390_2.00
Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_col
0.810
0.483
PK25870.1
M01325_2.00
Cannabis sativa
NRGTCAAM
KTTGACYN
PBM
Lambert et al.(2019)
pTH10156
0.810
0.621
WRKY17
M02550_2.00
Arabidopsis thaliana
NNDGTCAAHN
NDTTGACHNN
PBM
Weirauch et al.(2014)
pTH8088
0.808
0.483
WRKY17
M07385_2.00
Arabidopsis thaliana
NHAAAGTCAACRNN
NNYGTTGACTTTDN
Dap-seq
OMalley et al.(2016)
WRKY17_col_a
0.808
0.483
WRKY17
M07386_2.00
Arabidopsis thaliana
NMAAAGTCAACGN
NCGTTGACTTTKN
Dap-seq
OMalley et al.(2016)
WRKY17_colamp_a
0.808
0.483
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Eb03043.1.p
WRKY
174
231
DDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP
Links
Other
WRKY
family TFs
Other
Panicum virgatum
TFs
1264 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy