CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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YPR196W
(
Saccharomyces cerevisiae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
YPR196W
T388382_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables ATP hydrolysis activity; RNA helicase activity; and ribosomal small subunit binding activity. Involved in several processes, including intracellular mRNA localization; protein ubiquitination; and regulation of gene expression. Located in cytoplasm. Part of polysome. Orthologous to human UPF1 (UPF1 RNA helicase and ATPase). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YPR196W
M00110_2.00
Saccharomyces cerevisiae
NCGGDNWWWH
DWWWNHCCGN
PBM
Badis et al.(2008)
YPR196W_2047
(Direct)
(Direct)
YPR196W
M01601_2.00
Saccharomyces cerevisiae
CGGARAAA
TTTYTCCG
PBM
Zhu et al.(2009)
Ypr196w
(Direct)
(Direct)
YPR196W
M07537_2.00
Saccharomyces cerevisiae
CGGRDWAWY
RWTWHYCCG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0437.1
(Direct)
(Direct)
YPR196W
M08700_2.00
Saccharomyces cerevisiae
NNWNNBCGGRDAAWTHNNNND
HNNNNDAWTTHYCCGVNNWNN
Misc
DeBoer et al.(2011)
YPR196W_861
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MAL63_YEASX
M11473_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MAL63_Q5
0.597
0.868
ANIA_07343
M01326_2.00
Aspergillus nidulans
NNNCGGNNNN
NNNNCCGNNN
PBM
Lambert et al.(2019)
pEX0187
0.554
0.605
For this family, TFs with SR scores >
0.537
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00110_2.00
Zinc cluster
5
42
QSCDCCRVRRVKCDRNRPCDRCRQRNLRCTYLQPLRKR
M01601_2.00
Zinc cluster
6
43
QSCDCCRVRRVKCDRNRPCDRCRQRNLRCTYLQPLRKR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YPR196W
Zinc cluster
6
43
QSCDCCRVRRVKCDRNRPCDRCRQRNLRCTYLQPLRKR
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces cerevisiae
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy