CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
fgenesh1_pm.C_scaffold_10000002
(
Mycosphaerella fijiensis
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
fgenesh1_pm.C_scaffold_10000002
T390316_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
xlr-1
M02621_2.00
Neurospora crassa
NNNNWNNNN
NNNNWNNNN
PBM
Weirauch et al.(2014)
pTH9683
0.629
0.923
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_10000002
Zinc cluster
81
119
RACDQCNQLRTKCDGQHPCAHCVEFGLSCEYARERKKRG
Links
Other
Zinc cluster
family TFs
Other
Mycosphaerella fijiensis
TFs
104 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27613.m000642
Ricinus communis
27613.m000642
N
0.000
Aquca_005_00234
Aquilegia coerulea
Aquca_005_00234
N
0.000
Bostr.26675s0117
Boechera stricta
Bostr.26675s0117
N
0.000
Bra026077
Brassica rapa
Bra026077
N
0.000
cassava10826.m1
Manihot esculenta
cassava10826.m1
N
0.000
cassava34699.m1
Manihot esculenta
cassava34699.m1
N
0.000
Ca_09696
Cicer arietinum
Ca_09696
N
0.000
Ca_09786
Cicer arietinum
Ca_09786
N
0.000
Ca_13855
Cicer arietinum
Ca_13855
N
0.000
Cla001429
Citrullus lanatus
Cla001429
N
0.000
Cucsa.120390
Cucumis sativus
Cucsa.120390
N
0.000
Eucgr.A01051
Eucalyptus grandis
Eucgr.A01051
N
0.000
evm.TU.supercontig_12.194
Carica papaya
evm.TU.supercontig_12.194
N
0.000
gene03551-v1.0-hybrid
Fragaria vesca
gene03551-v1.0-hybrid
N
0.000
GLYMA02G46730
Glycine max
GLYMA02G46730
N
0.000
GLYMA08G43780
Glycine max
GLYMA08G43780
N
0.000
GLYMA09G22110
Glycine max
GLYMA09G22110
N
0.000
GLYMA14G01020
Glycine max
GLYMA14G01020
N
0.000
GLYMA14G01960
Glycine max
GLYMA14G01960
N
0.000
GLYMA18G09030
Glycine max
GLYMA18G09030
N
0.000
Gorai.001G192800
Gossypium raimondii
Gorai.001G192800
N
0.000
Gorai.007G167000
Gossypium raimondii
Gorai.007G167000
N
0.000
Gorai.009G446100
Gossypium raimondii
Gorai.009G446100
N
0.000
LjSGA_018703.2
Lotus japonicus
LjSGA_018703.2
N
0.000
Lus10003772.g
Linum usitatissimum
Lus10003772.g
N
0.000
MDP0000152670
Malus domestica
MDP0000152670
N
0.000
MDP0000205236
Malus domestica
MDP0000205236
N
0.000
MDP0000284679
Malus domestica
MDP0000284679
N
0.000
MDP0000804652
Malus domestica
MDP0000804652
N
0.000
MTR_3g056110
Medicago truncatula
MTR_3g056110
N
0.000
MTR_5g094450
Medicago truncatula
MTR_5g094450
N
0.000
MTR_5g097480
Medicago truncatula
MTR_5g097480
N
0.000
Pm012019
Prunus mume
Pm012019
N
0.000
Pm015021
Prunus mume
Pm015021
N
0.000
PRUPE_ppa004136mg
Prunus persica
PRUPE_ppa004136mg
N
0.000
SapurV1A.0030s0420
Salix purpurea
SapurV1A.0030s0420
N
0.000
SCL5
Arabidopsis thaliana
AT1G50600
N
0.000
SCL5
Populus trichocarpa
POPTR_0001s37270
N
0.000
SCL5
Vitis vinifera
VIT_19s0090g01740
N
0.000
SCL5
Arabidopsis lyrata
fgenesh2_kg.1__4145__AT1G50600.1
N
0.000
TCM_030733
Theobroma cacao
TCM_030733
N
0.000
VIT_12s0057g00560
Vitis vinifera
VIT_12s0057g00560
N
0.000