CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig679.26
(
Saccharomyces castellii
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
Scas_Contig679.26
T390704_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
UPC2
M00920_2.00
Saccharomyces cerevisiae
NTCGTWYVN
NBRWACGAN
PBM
Gordan et al.(2011)
Upc2
0.594
0.718
UPC2
M07508_2.00
Saccharomyces cerevisiae
NRWACGA
TCGTWYN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0411.1
0.594
0.718
UPC2
M08654_2.00
Saccharomyces cerevisiae
NRWACGA
TCGTWYN
Misc
DeBoer et al.(2011)
YDR213W_544
0.594
0.718
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig679.26
Zinc cluster
56
95
NGCDNCKRRRVKCDELKPTCQKCINMNLECVYSMPKPRKA
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces castellii
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy