Bra016763 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra016763 T001103_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.852 0.940
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.852 0.940
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.852 0.940
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.852 0.940
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.852 0.940
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.852 0.940
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.774 0.780
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.723 0.780
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.723 0.780
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.723 0.780
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.707 0.760
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.707 0.760
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.707 0.760
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.707 0.760
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.707 0.760
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.707 0.760
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.699 0.780
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.699 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016763.1-P AP2 29 80

Links

Other AP2 family TFs
Other Brassica rapa TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001040 Calypte anna Aan_R001040 I
Afo_R003471 Aptenodytes forsteri Afo_R003471 I
BGLB005801 Biomphalaria glabrata BGLB005801 I
CapteG145851 Capitella teleta CapteG145851 I
CGI_10012885 Crassostrea gigas CGI_10012885 I
ENSAMEG00000010559 Ailuropoda melanoleuca ENSAMEG00000010559 I
ENSAPLG00000008769 Anas platyrhynchos ENSAPLG00000008769 I
ENSCAFG00000002448 Canis familiaris ENSCAFG00000002448 I
ENSCJAG00000001029 Callithrix jacchus ENSCJAG00000001029 I
ENSCPOG00000005481 Cavia porcellus ENSCPOG00000005481 I
ENSCSAG00000013508 Chlorocebus sabaeus ENSCSAG00000013508 I
ENSDNOG00000003198 Dasypus novemcinctus ENSDNOG00000003198 I
Ahr Dipodomys ordii ENSDORG00000007750 I
ENSETEG00000019660 Echinops telfairi ENSETEG00000019660 I
AHR Homo sapiens ENSG00000106546 D
ahr1b Gasterosteus aculeatus ENSGACG00000015615 I
ENSGALG00000010836 Gallus gallus ENSGALG00000010836 I
ENSGGOG00000011367 Gorilla gorilla ENSGGOG00000011367 I
ENSLACG00000002803 Latimeria chalumnae ENSLACG00000002803 I
ENSLAFG00000015328 Loxodonta africana ENSLAFG00000015328 I
ENSMGAG00000010174 Meleagris gallopavo ENSMGAG00000010174 I
ENSMLUG00000000097 Myotis lucifugus ENSMLUG00000000097 I
ENSMMUG00000012203 Macaca mulatta ENSMMUG00000012203 I
ENSMODG00000001528 Monodelphis domestica ENSMODG00000001528 I
ENSMPUG00000013964 Mustela putorius furo ENSMPUG00000013964 I
Ahr Mus musculus ENSMUSG00000019256 D
ENSOARG00000009234 Ovis aries ENSOARG00000009234 I
AHR Oryctolagus cuniculus ENSOCUG00000003877 I
ENSOGAG00000012656 Otolemur garnettii ENSOGAG00000012656 I
ENSOPRG00000010358 Ochotona princeps ENSOPRG00000010358 I
ENSP00000385642 Macaca fascicularis ENSP00000385642 I
ENSPANG00000002444 Papio anubis ENSPANG00000002444 I
ENSPCAG00000006894 Procavia capensis ENSPCAG00000006894 I
ENSPPYG00000017758 Pongo abelii ENSPPYG00000017758 I
ENSPSIG00000010051 Pelodiscus sinensis ENSPSIG00000010051 I
AHR Pan troglodytes ENSPTRG00000018955 I
ENSPVAG00000002167 Pteropus vampyrus ENSPVAG00000002167 I
Ahr Rattus norvegicus ENSRNOG00000004342 I
ENSSHAG00000001563 Sarcophilus harrisii ENSSHAG00000001563 I
ENSSSCG00000015364 Sus scrofa ENSSSCG00000015364 I
AHR Sus scrofa ENSSSCG00000030484 I
ENSSTOG00000003086 Ictidomys tridecemlineatus ENSSTOG00000003086 I
ENSTBEG00000007210 Tupaia belangeri ENSTBEG00000007210 I
ENSTGUG00000002585 Taeniopygia guttata ENSTGUG00000002585 I
ENSTSYG00000010830 Tarsius syrichta ENSTSYG00000010830 I
ENSTTRG00000006913 Tursiops truncatus ENSTTRG00000006913 I
ENSVPAG00000008443 Vicugna pacos ENSVPAG00000008443 I
Gfo_R002789 Geospiza fortis Gfo_R002789 I
LotgiG117861 Lottia gigantea LotgiG117861 I
Myotis_brandtii_AHR_10031750 Myotis brandtii Myotis_brandtii_AHR_10031750 I
PXEA_0000742401 Protopolystoma xenopodis PXEA_0000742401 I
SMU15013078 Schmidtea mediterranea SMU15013078 I
SMU15033026 Schmidtea mediterranea SMU15033026 I
SPU_005022 Strongylocentrotus purpuratus SPU_005022 I
Tal_R011867 Tyto alba Tal_R011867 I
XP_002161735.1 Hydra magnipapillata XP_002161735.1 I