cassava28944.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava28944.valid.m1 T006873_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.796 1.000
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.782 0.960
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.763 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava28944.valid.m1 AP2 20 71

Links

Other AP2 family TFs
Other Manihot esculenta TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29646.m001108 Ricinus communis 29646.m001108 N
BZIP34 Arabidopsis thaliana AT2G42380 N
BZIP61 Arabidopsis thaliana AT3G58120 N
Bo4g015960 Brassica oleracea Bo4g015960 N
Bo6g074510 Brassica oleracea Bo6g074510 N
Bo8g092430 Brassica oleracea Bo8g092430 N
Bostr.18722s0001 Boechera stricta Bostr.18722s0001 N
Bostr.20903s0063 Boechera stricta Bostr.20903s0063 N
Bra000256 Brassica rapa Bra000256 N
Bra003320 Brassica rapa Bra003320 N
Bra004689 Brassica rapa Bra004689 N
Bra007380 Brassica rapa Bra007380 N
Cagra.0686s0029 Capsella grandiflora Cagra.0686s0029 N
Cagra.2636s0024 Capsella grandiflora Cagra.2636s0024 N
Carubv10017617m.g Capsella rubella Carubv10017617m.g N
Carubv10023644m.g Capsella rubella Carubv10023644m.g N
cassava15850.m1 Manihot esculenta cassava15850.m1 N
Ca_02472 Cicer arietinum Ca_02472 N
Ca_11292 Cicer arietinum Ca_11292 N
chr3.CM0160.1080.nc Lotus japonicus chr3.CM0160.1080.nc N
Ciclev10015966m.g Citrus clementina Ciclev10015966m.g N
Cla015875 Citrullus lanatus Cla015875 N
Cucsa.148840 Cucumis sativus Cucsa.148840 N
Eucgr.K01085 Eucalyptus grandis Eucgr.K01085 N
evm.TU.supercontig_209.8 Carica papaya evm.TU.supercontig_209.8 N
ATBZIP34 Arabidopsis lyrata fgenesh2_kg.4__2390__AT2G42380.2 N
ATBZIP61 Arabidopsis lyrata fgenesh2_kg.5__2254__AT3G58120.1 N
gene17796-v1.0-hybrid Fragaria vesca gene17796-v1.0-hybrid N
GLYMA06G43760 Glycine max GLYMA06G43760 N
GLYMA12G14130 Glycine max GLYMA12G14130 N
GLYMA12G33600 Glycine max GLYMA12G33600 N
GLYMA13G36870 Glycine max GLYMA13G36870 N
Lus10002185.g Linum usitatissimum Lus10002185.g N
Lus10017656.g Linum usitatissimum Lus10017656.g N
Lus10033630.g Linum usitatissimum Lus10033630.g N
MTR_2g090900 Medicago truncatula MTR_2g090900 N
MTR_4g079500 Medicago truncatula MTR_4g079500 N
PGSC0003DMG400009388 Solanum tuberosum PGSC0003DMG400009388 N
PGSC0003DMG401007810 Solanum tuberosum PGSC0003DMG401007810 N
PK21227.1 Cannabis sativa PK21227.1 N
Pm014253 Prunus mume Pm014253 N
POPTR_0013s12810 Populus trichocarpa POPTR_0013s12810 N
PRUPE_ppa016271mg Prunus persica PRUPE_ppa016271mg N
SapurV1A.0474s0270 Salix purpurea SapurV1A.0474s0270 N
SapurV1A.0500s0200 Salix purpurea SapurV1A.0500s0200 N
SapurV1A.1835s0070 Salix purpurea SapurV1A.1835s0070 N
SapurV1A.1977s0020 Salix purpurea SapurV1A.1977s0020 N
Solyc07g053450.2 Solanum lycopersicum Solyc07g053450.2 N
Solyc12g010800.1 Solanum lycopersicum Solyc12g010800.1 N
TCM_003607 Theobroma cacao TCM_003607 N
Thhalv10006090m.g Eutrema salsugineum Thhalv10006090m.g N
Thhalv10016923m.g Eutrema salsugineum Thhalv10016923m.g N
VIT_12s0028g02590 Vitis vinifera VIT_12s0028g02590 N