CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cucsa.219890 *(Cucumis sativus)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Cucsa.219890	T007056_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.816	0.939
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.816	0.939
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.768	0.857
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.768	0.857
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.768	0.857
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.732	0.776
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.732	0.776
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.726	0.796
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.726	0.796
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.725	0.776
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.725	0.776
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.725	0.776
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.723	0.796
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.723	0.796
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.723	0.796
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.721	0.796
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.719	0.776
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.716	0.735
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.698	0.714
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.694	0.735
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.692	0.776
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.692	0.776
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.692	0.776
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.691	0.735
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.686	0.755
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.686	0.755
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.686	0.755
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.684	0.735
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.684	0.735
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.684	0.714
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.682	0.755
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.679	0.735
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.678	0.735
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cucsa.219890.1	AP2	115	166	KNYRGVRQRPWGKWAAEIRDPIRAARVWLGTFNTAEDAARAYDEAAIKFRGP

Links
Other AP2 family TFs
Other *Cucumis sativus* TFs

1100 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACOC_0000909601	Angiostrongylus costaricensis	ACOC_0000909601	N
ANCCEY_02227	Ancylostoma ceylanicum	ANCCEY_02227	N
ASIM_0001061401	Anisakis simplex	ASIM_0001061401	N
ASU_13814	Ascaris suum	ASU_13814	N
Bm4196	Brugia malayi	Bm4196	N
CBG14076	Caenorhabditis briggsae	CBG14076	N
CBN28426	Caenorhabditis brenneri	CBN28426	N
DICVIV_06612	Dictyocaulus viviparus	DICVIV_06612	N
EVEC_0001355301	Enterobius vermicularis	EVEC_0001355301	N
GPLIN_001118300	Globodera pallida	GPLIN_001118300	N
HPLM_0000886801	Haemonchus placei	HPLM_0000886801	N
L596_g148	Steinernema carpocapsae	L596_g148	N
L889_g31190	Steinernema feltiae	L889_g31190	N
L892_g12859	Steinernema scapterisci	L892_g12859	N
L893_g14515	Steinernema glaseri	L893_g14515	N
L898_g33187	Steinernema monticolum	L898_g33187	N
LOAG_16508	Loa loa	LOAG_16508	N
maker-nMf.1.1.scaf01187-augustus-gene-0.14	Meloidogyne floridensis	maker-nMf.1.1.scaf01187-augustus-gene-0.14	N
nAv.1.0.1.g08576	Acanthocheilonema viteae	nAv.1.0.1.g08576	N
NBR_0000487701	Nippostrongylus brasiliensis	NBR_0000487701	N
nDi.2.2.2.g00913	Dirofilaria immitis	nDi.2.2.2.g00913	N
NECAME_03708	Necator americanus	NECAME_03708	N
nLs.2.1.2.g06387	Litomosoides sigmodontis	nLs.2.1.2.g06387	N
nOo.2.0.1.g07401	Onchocerca ochengi	nOo.2.0.1.g07401	N
PEQ_0001215301	Parascaris equorum	PEQ_0001215301	N
Ppa-npax-4	Pristionchus pacificus	PPA03062	N
PTRK_0001095200	Parastrongyloides trichosuri	PTRK_0001095200	N
scaffold1066-EXSNAP2012.3	Pristionchus exspectatus	scaffold1066-EXSNAP2012.3	N
SPAL_0000243500	Strongyloides papillosus	SPAL_0000243500	N
SSTP_0000993700	Strongyloides stercoralis	SSTP_0000993700	N
TCLT_0000997101	Thelazia callipaeda	TCLT_0000997101	N
TCNE_0000151101	Toxocara canis	TCNE_0000151101	N
WBGene00239907	Onchocerca volvulus	WBGene00239907	N
WUBG_05014	Wuchereria bancrofti	WUBG_05014	N

Cucsa.219890 (Cucumis sativus) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1100 Related TFs

Cucsa.219890 **(Cucumis sativus)
AP2**