Bostr.7867s0360 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.7867s0360 T007666_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.804 0.960
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.804 0.960
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.800 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.800 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.800 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.800 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.778 0.920
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.778 0.920
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.778 0.920
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.736 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.736 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.723 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.723 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.723 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.723 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.723 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.723 0.760
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.705 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.705 0.900
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.700 0.760
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.690 0.800
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.679 0.900
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.679 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.7867s0360.1.p AP2 49 100

Links

Other AP2 family TFs
Other Boechera stricta TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007733 Calypte anna Aan_R007733 I 0.000
Afo_R009498 Aptenodytes forsteri Afo_R009498 I 0.000
Alligator_sinensis_CCG006997.1 Alligator sinensis Alligator_sinensis_CCG006997.1 I 0.000
Cmyd_10012130 Chelonia mydas Cmyd_10012130 I 0.000
ENSACAG00000010131 Anolis carolinensis ENSACAG00000010131 I 0.000
ENSAMEG00000018009 Ailuropoda melanoleuca ENSAMEG00000018009 I 0.000
ENSAPLG00000015153 Anas platyrhynchos ENSAPLG00000015153 I 0.000
TET1 Bos taurus ENSBTAG00000037756 I 0.000
TET1 Canis familiaris ENSCAFG00000013739 I 0.000
TET1 Callithrix jacchus ENSCJAG00000019005 I 0.000
TET1 Cavia porcellus ENSCPOG00000009306 I 0.000
ENSCSAG00000007633 Chlorocebus sabaeus ENSCSAG00000007633 I 0.000
TET1 Dasypus novemcinctus ENSDNOG00000018763 I 0.000
ENSECAG00000015450 Equus caballus ENSECAG00000015450 I 0.000
ENSFALG00000013006 Ficedula albicollis ENSFALG00000013006 I 0.000
TET1 Felis catus ENSFCAG00000012673 I 0.000
TET1 Homo sapiens ENSG00000138336 D 0.000
ENSGALG00000004073 Gallus gallus ENSGALG00000004073 I 0.000
TET1 Gorilla gorilla ENSGGOG00000011822 I 0.000
TET1 Loxodonta africana ENSLAFG00000006171 I 0.000
TET1 Meleagris gallopavo ENSMGAG00000004157 I 0.000
TET1 Macaca mulatta ENSMMUG00000023198 I 0.000
ENSMPUG00000012204 Mustela putorius furo ENSMPUG00000012204 I 0.000
ENSNLEG00000011782 Nomascus leucogenys ENSNLEG00000011782 I 0.000
ENSOANG00000015049 Ornithorhynchus anatinus ENSOANG00000015049 I 0.000
ENSOARG00000005141 Ovis aries ENSOARG00000005141 I 0.000
TET1 Oryctolagus cuniculus ENSOCUG00000013277 I 0.000
TET1 Otolemur garnettii ENSOGAG00000034454 I 0.000
ENSOPRG00000005862 Ochotona princeps ENSOPRG00000005862 I 0.000
ENSP00000362748-D1 Bos grunniens ENSP00000362748-D1 I 0.000
ENSPANG00000022122 Papio anubis ENSPANG00000022122 I 0.000
TET1 Procavia capensis ENSPCAG00000007795 I 0.000
ENSPPYG00000002393 Pongo abelii ENSPPYG00000002393 I 0.000
ENSPSIG00000006159 Pelodiscus sinensis ENSPSIG00000006159 I 0.000
TET1 Pan troglodytes ENSPTRG00000002558 I 0.000
TET1 Pteropus vampyrus ENSPVAG00000003593 I 0.000
TET1 Sorex araneus ENSSARG00000011693 I 0.000
ENSTGUG00000003754 Taeniopygia guttata ENSTGUG00000003754 I 0.000
ENSTSYG00000006963 Tarsius syrichta ENSTSYG00000006963 I 0.000
TET1 Tursiops truncatus ENSTTRG00000001566 I 0.000
TET1 Vicugna pacos ENSVPAG00000011820 I 0.000
Gfo_R013982 Geospiza fortis Gfo_R013982 I 0.000
Myotis_brandtii_TET1_10018894 Myotis brandtii Myotis_brandtii_TET1_10018894 I 0.000
Ogr07249 Ophisaurus gracilis Ogr07249 I 0.000
Pvit_00547 Pogona vitticeps Pvit_00547 I 0.000
Sakowv30045758m.g Saccoglossus kowalevskii Sakowv30045758m.g I 0.000