Cagra.6748s0006 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.6748s0006 T007800_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.781 0.860
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.768 0.840
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.768 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6748s0006.1.p AP2 189 240

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

428 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG01353 Caenorhabditis briggsae CBG01353 I 0.000
CBG06614 Caenorhabditis briggsae CBG06614 I 0.000
CBG19143 Caenorhabditis briggsae CBG19143 I 0.000
CBG19144 Caenorhabditis briggsae CBG19144 I 0.000
CBN00299 Caenorhabditis brenneri CBN00299 I 0.000
CRE05778 Caenorhabditis remanei CRE05778 I 0.000
CRE09222 Caenorhabditis remanei CRE09222 I 0.000
CRE14845 Caenorhabditis remanei CRE14845 I 0.000
CRE14846 Caenorhabditis remanei CRE14846 I 0.000
CRE16082 Caenorhabditis remanei CRE16082 I 0.000
CRE18428 Caenorhabditis remanei CRE18428 I 0.000
nhr-55 Caenorhabditis elegans WBGene00003645 I 0.000
nhr-110 Caenorhabditis elegans WBGene00003700 I 0.000
nhr-117 Caenorhabditis elegans WBGene00003707 I 0.000
nhr-177 Caenorhabditis elegans WBGene00017503 D 0.000
nhr-179 Caenorhabditis elegans WBGene00017512 I 0.000