Carubv10021988m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10021988m.g T007906_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.702 0.816
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.702 0.816
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.702 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021988m AP2 115 166

Links

Other AP2 family TFs
Other Capsella rubella TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF118 Arabidopsis thaliana AT1G68550 D 0.702
Bostr.26959s0035 Boechera stricta Bostr.26959s0035 I 0.697
Cagra.3364s0010 Capsella grandiflora Cagra.3364s0010 I 0.832
evm.TU.supercontig_1.178 Carica papaya evm.TU.supercontig_1.178 I 0.731
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.692
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.759
Gorai.013G076100 Gossypium raimondii Gorai.013G076100 N 0.746
mgf006610m Mimulus guttatus mgf006610m I 0.708
POPTR_0010s13540 Populus trichocarpa POPTR_0010s13540 I 0.683
SapurV1A.0078s0470 Salix purpurea SapurV1A.0078s0470 I 0.683
TCM_011811 Theobroma cacao TCM_011811 I 0.759