fgenesh2_kg.2__1107__AT1G68550.2 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh2_kg.2__1107__AT1G68550.2 T001652_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.763 0.863
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.763 0.863
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.763 0.863
ERF119
M01093_2.00 		Arabidopsis thaliana
NNNGCCGNN
NNCGGCNNN		 PBM
Lambert et al.(2019)
pTH11551 		0.706 0.784
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__1107__AT1G68550.2 AP2 115 166

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.26959s0035 Boechera stricta Bostr.26959s0035 I 0.780
TCM_011811 Theobroma cacao TCM_011811 I 0.766
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.766
ERF118 Arabidopsis thaliana AT1G68550 D 0.763
Bra036360 Brassica rapa Bra036360 I 0.730
scaffold_500470.1 Arabidopsis lyrata scaffold_500470.1 I 0.730
Cagra.6197s0021 Capsella grandiflora Cagra.6197s0021 I 0.730
Carubv10017565m.g Capsella rubella Carubv10017565m.g I 0.725
Thhalv10019722m.g Eutrema salsugineum Thhalv10019722m.g I 0.717
Thhalv10004526m.g Eutrema salsugineum Thhalv10004526m.g I 0.716
Bo7g082250 Brassica oleracea Bo7g082250 I 0.715
Bra025170 Brassica rapa Bra025170 I 0.715
Bostr.0556s0264 Boechera stricta Bostr.0556s0264 I 0.714
ERF119 Arabidopsis thaliana AT3G25890 D 0.706
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.697
evm.TU.supercontig_1.178 Carica papaya evm.TU.supercontig_1.178 I 0.697
POPTR_0010s13540 Populus trichocarpa POPTR_0010s13540 I 0.696
SapurV1A.0078s0470 Salix purpurea SapurV1A.0078s0470 I 0.696
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.693
Cagra.3364s0010 Capsella grandiflora Cagra.3364s0010 I 0.692
Carubv10021988m.g Capsella rubella Carubv10021988m.g I 0.692
Bo2g138790 Brassica oleracea Bo2g138790 I 0.690
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.690
Cla021763 Citrullus lanatus Cla021763 I 0.689
Lus10021678.g Linum usitatissimum Lus10021678.g I 0.684
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.681
POPTR_0008s11900 Populus trichocarpa POPTR_0008s11900 I 0.680
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.680
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.680
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.677