GLYMA20G24920 (Glycine max)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 GLYMA20G24920 T002055_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.694 0.647
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.694 0.647
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.694 0.647
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.693 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA20G24920.2 AP2 118 169
GLYMA20G24920.3 AP2 118 169
GLYMA20G24920.4 AP2 118 169

Links

Other AP2 family TFs
Other Glycine max TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.774
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.759
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.743
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.730
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.723
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.722
Cla021763 Citrullus lanatus Cla021763 I 0.721
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.720
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.720
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.720
Cla008128 Citrullus lanatus Cla008128 I 0.709
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.709
TCM_011811 Theobroma cacao TCM_011811 I 0.695
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.695
ERF118 Arabidopsis thaliana AT1G68550 D 0.694
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.693
GLYMA17G18610 Glycine max GLYMA17G18610 N 0.693
PK24580.1 Cannabis sativa PK24580.1 D 0.693
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.688
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.688
27524.m000298 Ricinus communis 27524.m000298 I 0.680
cassava35757.valid.m1 Manihot esculenta cassava35757.valid.m1 I 0.680
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.680
cassava43300.valid.m1 Manihot esculenta cassava43300.valid.m1 I 0.680
MDP0000119956 Malus domestica MDP0000119956 I 0.679
MDP0000743350 Malus domestica MDP0000743350 I 0.679
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.678
POPTR_0008s11900 Populus trichocarpa POPTR_0008s11900 I 0.678
Ca_05485 Cicer arietinum Ca_05485 I 0.678
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.678