CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400014541
(
Solanum tuberosum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
PGSC0003DMG400014541
T004417_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK24580.1
M01101_2.00
Cannabis sativa
VGCCGGCM
KGCCGGCB
PBM
Lambert et al.(2019)
pTH11280
0.682
0.765
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400037697
AP2
106
157
SKYRGVRQRKWGKWAAEIRDPFKSRRVWLGTYSTAEEASHAYEMKRLEFEAM
PGSC0003DMT400037698
AP2
106
157
SKYRGVRQRKWGKWAAEIRDPFKSRRVWLGTYSTAEEASHAYEMKRLEFEAM
PGSC0003DMT400037699
AP2
106
157
SKYRGVRQRKWGKWAAEIRDPFKSRRVWLGTYSTAEEASHAYEMKRLEFEAM
Links
Other
AP2
family TFs
Other
Solanum tuberosum
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc05g009450.1
Solanum lycopersicum
Solyc05g009450.1
I
0.795
GLYMA20G24920
Glycine max
GLYMA20G24920
I
0.743
GLYMA08G15830
Glycine max
GLYMA08G15830
I
0.740
Cucsa.256230
Cucumis sativus
Cucsa.256230
I
0.715
Cla021763
Citrullus lanatus
Cla021763
I
0.713
chr6.LjT13N05.60.nc
Lotus japonicus
chr6.LjT13N05.60.nc
I
0.698
LjSGA_016572.1
Lotus japonicus
LjSGA_016572.1
I
0.698
LjSGA_132504.1
Lotus japonicus
LjSGA_132504.1
I
0.698
VIT_01s0011g03470
Vitis vinifera
VIT_01s0011g03470
I
0.697
PGSC0003DMG400015880
Solanum tuberosum
PGSC0003DMG400015880
I
0.693
Solyc04g007180.1
Solanum lycopersicum
Solyc04g007180.1
I
0.693
GLYMA10G42130
Glycine max
GLYMA10G42130
I
0.692
Cla008128
Citrullus lanatus
Cla008128
I
0.684
Cucsa.365320
Cucumis sativus
Cucsa.365320
I
0.684
PK24580.1
Cannabis sativa
PK24580.1
D
0.682
fgenesh2_kg.2__1107__AT1G68550.2
Arabidopsis lyrata
fgenesh2_kg.2__1107__AT1G68550.2
I
0.677