Solyc05g009450.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc05g009450.1 T005465_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.679 0.765
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc05g009450.1.1 AP2 101 152

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400014541 Solanum tuberosum PGSC0003DMG400014541 I 0.795
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.759
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.731
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.730
Cla021763 Citrullus lanatus Cla021763 I 0.729
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.715
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.715
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.715
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.713
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.709
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.709
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.709
Cla008128 Citrullus lanatus Cla008128 I 0.700
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.700
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.680
PK24580.1 Cannabis sativa PK24580.1 D 0.679
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.677