Q8S2T3_BRANA (Brassica napus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Q8S2T3_BRANA T010128_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8S2T3_BRANA
M09745_2.00		 Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.811 1.000
Q8W242_BRANA
M09747_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF_01 		0.707 0.900
Q8S2T2_BRANA
M09744_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF17_01 		0.707 0.900
A6N8P3_BRANA
M09738_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBI5_01 		0.707 0.900
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.705 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.703 0.860
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.703 0.860
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.703 0.860
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.699 0.880
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.699 0.880
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.696 0.860
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.696 0.860
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.696 0.860
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.696 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q8S2T3_BRANA AP2 49 100

Links

Other AP2 family TFs
Other Brassica napus TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA037592 Oryza indica BGIOSGA037592 I
F775_30589 Aegilops tauschii F775_30589 I
GRMZM2G160902 Zea mays GRMZM2G160902 I
GRMZM2G479885 Zea mays GRMZM2G479885 D
LPERR12G12950 Leersia perrieri LPERR12G12950 I
MLOC_51930 Hordeum vulgare MLOC_51930 I
OBART12G15770 Oryza barthii OBART12G15770 I
OGLUM12G17310 Oryza glumaepatula OGLUM12G17310 I
OMERI02G09390 Oryza meridionalis OMERI02G09390 I
ONIVA12G14510 Oryza nivara ONIVA12G14510 I
OPUNC12G14150 Oryza punctata OPUNC12G14150 I
ORGLA11G0215100 Oryza glaberrima ORGLA11G0215100 I
ORGLA12G0138000 Oryza glaberrima ORGLA12G0138000 I
ORUFI12G17520 Oryza rufipogon ORUFI12G17520 I
Pavir.Ca02565 Panicum virgatum Pavir.Ca02565 I
Pavir.Cb00560 Panicum virgatum Pavir.Cb00560 I
Sb08g018170 Sorghum bicolor Sb08g018170 I
Si023541m.g Setaria italica Si023541m.g I
Traes_5BS_FF44610EF1 Triticum aestivum Traes_5BS_FF44610EF1 I
Traes_5DS_011851EE7 Triticum aestivum Traes_5DS_011851EE7 I