chr2.CM0060.390.nc (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr2.CM0060.390.nc T010165_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.770 0.840
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.763 0.840
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.763 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0060.390.nc AP2 129 180

Links

Other AP2 family TFs
Other Lotus japonicus TFs

438 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008698 Ricinus communis 30174.m008698 I 0.000
AMTR_s00158p00056990 Amborella trichopoda AMTR_s00158p00056990 I 0.000
Aquca_002_01218 Aquilegia coerulea Aquca_002_01218 I 0.000
Aquca_013_00209 Aquilegia coerulea Aquca_013_00209 I 0.000
GBF2 Arabidopsis thaliana AT4G01120 D 0.000
GBF1 Arabidopsis thaliana AT4G36730 D 0.000
BGIOSGA001085 Oryza indica BGIOSGA001085 I 0.000
BGIOSGA020389 Oryza indica BGIOSGA020389 I 0.000
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I 0.000
BRADI2G15940 Brachypodium distachyon BRADI2G15940 I 0.000
BRADI2G45567 Brachypodium distachyon BRADI2G45567 I 0.000
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I 0.000
Carubv10005287m.g Capsella rubella Carubv10005287m.g I 0.000
cassava29861.valid.m1 Manihot esculenta cassava29861.valid.m1 I 0.000
cassava29862.valid.m1 Manihot esculenta cassava29862.valid.m1 I 0.000
cassava43569.valid.m1 Manihot esculenta cassava43569.valid.m1 I 0.000
cassava43570.valid.m1 Manihot esculenta cassava43570.valid.m1 I 0.000
cassava43571.valid.m1 Manihot esculenta cassava43571.valid.m1 I 0.000
cassava46468.m1 Manihot esculenta cassava46468.m1 I 0.000
Ca_01293 Cicer arietinum Ca_01293 I 0.000
Ciclev10020314m.g Citrus clementina Ciclev10020314m.g I 0.000
Eucgr.E00078 Eucalyptus grandis Eucgr.E00078 I 0.000
F775_07803 Aegilops tauschii F775_07803 I 0.000
gene18928-v1.0-hybrid Fragaria vesca gene18928-v1.0-hybrid I 0.000
gene32022-v1.0-hybrid Fragaria vesca gene32022-v1.0-hybrid I 0.000
GLYMA03G41590 Glycine max GLYMA03G41590 I 0.000
GLYMA07G06620 Glycine max GLYMA07G06620 I 0.000
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.000
GLYMA16G03190 Glycine max GLYMA16G03190 I 0.000
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.000
GLYMA19G44190 Glycine max GLYMA19G44190 I 0.000
Gorai.004G153100 Gossypium raimondii Gorai.004G153100 I 0.000
Gorai.007G105100 Gossypium raimondii Gorai.007G105100 I 0.000
Gorai.008G123200 Gossypium raimondii Gorai.008G123200 I 0.000
GRMZM2G011932 Zea mays GRMZM2G011932 I 0.000
GRMZM2G117851 Zea mays GRMZM2G117851 I 0.000
GRMZM2G160136 Zea mays GRMZM2G160136 I 0.000
GRMZM2G358701 Zea mays GRMZM2G358701 I 0.000
GRMZM5G848942 Zea mays GRMZM5G848942 I 0.000
GSMUA_Achr1G05050_001 Musa acuminata GSMUA_Achr1G05050_001 I 0.000
GSMUA_Achr6G32000_001 Musa acuminata GSMUA_Achr6G32000_001 I 0.000
GSMUA_Achr9G05310_001 Musa acuminata GSMUA_Achr9G05310_001 I 0.000
LPERR01G21580 Leersia perrieri LPERR01G21580 I 0.000
LPERR05G21930 Leersia perrieri LPERR05G21930 I 0.000
Lus10003034.g Linum usitatissimum Lus10003034.g I 0.000
Lus10005146.g Linum usitatissimum Lus10005146.g I 0.000
MDP0000138052 Malus domestica MDP0000138052 I 0.000
MDP0000239688 Malus domestica MDP0000239688 I 0.000
MDP0000493795 Malus domestica MDP0000493795 I 0.000
MDP0000545420 Malus domestica MDP0000545420 I 0.000
MLOC_6711 Hordeum vulgare MLOC_6711 I 0.000
MTR_7g116890 Medicago truncatula MTR_7g116890 I 0.000
MTR_8g070820 Medicago truncatula MTR_8g070820 I 0.000
OB01G34490 Oryza brachyantha OB01G34490 I 0.000
OB05G33790 Oryza brachyantha OB05G33790 I 0.000
OBART01G25300 Oryza barthii OBART01G25300 I 0.000
OBART05G26280 Oryza barthii OBART05G26280 I 0.000
OGLUM01G29060 Oryza glumaepatula OGLUM01G29060 I 0.000
OGLUM05G27920 Oryza glumaepatula OGLUM05G27920 I 0.000
OLONG_003667 Oryza longistaminata OLONG_003667 I 0.000
OLONG_022047 Oryza longistaminata OLONG_022047 I 0.000
OMERI01G23000 Oryza meridionalis OMERI01G23000 I 0.000
OMERI03G30340 Oryza meridionalis OMERI03G30340 I 0.000
ONIVA01G28540 Oryza nivara ONIVA01G28540 I 0.000
ONIVA05G28290 Oryza nivara ONIVA05G28290 I 0.000
OPUNC01G25140 Oryza punctata OPUNC01G25140 I 0.000
OPUNC05G23850 Oryza punctata OPUNC05G23850 I 0.000
orange1.1g014660m.g Citrus sinensis orange1.1g014660m.g I 0.000
ORGLA01G0206000 Oryza glaberrima ORGLA01G0206000 I 0.000
ORGLA05G0227800 Oryza glaberrima ORGLA05G0227800 I 0.000
ORUFI01G28110 Oryza rufipogon ORUFI01G28110 I 0.000
ORUFI05G28170 Oryza rufipogon ORUFI05G28170 I 0.000
OS01G0658900 Oryza sativa OS01G0658900 I 0.000
OS05G0569300 Oryza sativa OS05G0569300 I 0.000
Pavir.Ca00968 Panicum virgatum Pavir.Ca00968 I 0.000
Pavir.Ea02315 Panicum virgatum Pavir.Ea02315 I 0.000
PDK_20s1349941g001 Phoenix dactylifera PDK_20s1349941g001 I 0.000
PK07494.1 Cannabis sativa PK07494.1 I 0.000
PK09653.1 Cannabis sativa PK09653.1 D 0.000
Pm024103 Prunus mume Pm024103 I 0.000
POPTR_0002s16870 Populus trichocarpa POPTR_0002s16870 I 0.000
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I 0.000
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I 0.000
PRUPE_ppa020524mg Prunus persica PRUPE_ppa020524mg I 0.000
Q40645_ORYSA Oryza sativa Q40645_ORYSA D 0.000
Q41109_PHAVU Phaseolus vulgaris Q41109_PHAVU D 0.000
SapurV1A.0013s0770 Salix purpurea SapurV1A.0013s0770 I 0.000
SapurV1A.0255s0070 Salix purpurea SapurV1A.0255s0070 I 0.000
Sb03g030050 Sorghum bicolor Sb03g030050 I 0.000
Sb09g028990 Sorghum bicolor Sb09g028990 I 0.000
GBF1 Arabidopsis lyrata scaffold_700433.1 I 0.000
Si001929m.g Setaria italica Si001929m.g I 0.000
Si022388m.g Setaria italica Si022388m.g I 0.000
TCM_005210 Theobroma cacao TCM_005210 I 0.000
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I 0.000
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I 0.000
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I 0.000
TRIUR3_18341 Triticum urartu TRIUR3_18341 I 0.000
VIT_02s0025g01020 Vitis vinifera VIT_02s0025g01020 I 0.000