CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ba02799
(
Panicum virgatum
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
Pavir.Ba02799
T028439_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ba02799.1.p
BED ZF
28
74
SNVWEHYEQNLVDVDGDLKAVCKYCGIHLNTKSGTSSLRGHIASACP
Links
Other
BED ZF
family TFs
Other
Panicum virgatum
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29631.m001025
Ricinus communis
29631.m001025
N
cassava41084.m1
Manihot esculenta
cassava41084.m1
N
evm.TU.supercontig_69.52
Carica papaya
evm.TU.supercontig_69.52
N
gene00631-v1.0-hybrid
Fragaria vesca
gene00631-v1.0-hybrid
N
GSMUA_Achr3G00640_001
Musa acuminata
GSMUA_Achr3G00640_001
N
MDP0000790939
Malus domestica
MDP0000790939
N