Bra040260 (Brassica rapa)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 Bra040260 T057534_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.884 0.935
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.884 0.935
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.812 0.694
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.805 0.758
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.805 0.758
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.805 0.758
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.805 0.758
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.794 0.677
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.794 0.677
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.794 0.677
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.794 0.677
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.794 0.677
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.794 0.677
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.788 0.581
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.788 0.581
DPBF3
M01133_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Lambert et al.(2019)
pTH11531 		0.786 0.581
DPBF3
M01058_2.00 		Arabidopsis thaliana
HBACGTGKM
KMCACGTVD		 PBM
Sullivan et al.(2014)
pTH7219 		0.786 0.581
DPBF3
M01059_2.00 		Arabidopsis thaliana
NNMCACGTVN
NBACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7547 		0.786 0.581
DPBF3
M06777_2.00 		Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA		 Dap-seq
OMalley et al.(2016)
AREB3_colamp_a 		0.786 0.581
DPBF3
M06778_2.00 		Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA		 Dap-seq
OMalley et al.(2016)
AREB3_col_v31 		0.786 0.581
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra040260.1-P bZIP 285 346

Links

Other bZIP family TFs
Other Brassica rapa TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007260 Calypte anna Aan_R007260 I
Afo_R005310 Aptenodytes forsteri Afo_R005310 I
Alligator_sinensis_CCG003098.5 Alligator sinensis Alligator_sinensis_CCG003098.5 I
Cmyd_10014807 Chelonia mydas Cmyd_10014807 I
ENSAMEG00000015241 Ailuropoda melanoleuca ENSAMEG00000015241 I
ENSAPLG00000005397 Anas platyrhynchos ENSAPLG00000005397 I
GTF2I Bos taurus ENSBTAG00000009780 I
ENSBTAP00000012902-D1 Bos grunniens ENSBTAP00000012902-D1 I
GTF2I Canis familiaris ENSCAFG00000011514 I
GTF2I Callithrix jacchus ENSCJAG00000016182 I
GTF2I Cavia porcellus ENSCPOG00000004071 I
ENSCSAG00000018227 Chlorocebus sabaeus ENSCSAG00000018227 I
ENSDNOG00000000823 Dasypus novemcinctus ENSDNOG00000000823 I
GTF2I Equus caballus ENSECAG00000020289 I
ENSFALG00000007065 Ficedula albicollis ENSFALG00000007065 I
GTF2I Felis catus ENSFCAG00000002617 I
GTF2I Homo sapiens ENSG00000263001 D
GTF2I Gallus gallus ENSGALG00000021665 I
ENSLACG00000018432 Latimeria chalumnae ENSLACG00000018432 I
GTF2I Loxodonta africana ENSLAFG00000003646 I
GTF2I Meleagris gallopavo ENSMGAG00000002373 I
GTF2I Myotis lucifugus ENSMLUG00000002844 I
GTF2I Macaca mulatta ENSMMUG00000006823 I
GTF2I Monodelphis domestica ENSMODG00000007022 I
Gtf2i Mus musculus ENSMUSG00000060261 I
ENSNLEG00000008741 Nomascus leucogenys ENSNLEG00000008741 I
GTF2I Ornithorhynchus anatinus ENSOANG00000012919 I
ENSOARG00000011276 Ovis aries ENSOARG00000011276 I
GTF2I Oryctolagus cuniculus ENSOCUG00000002063 I
GTF2I Otolemur garnettii ENSOGAG00000029837 I
ENSP00000322542 Macaca fascicularis ENSP00000322542 I
ENSPANG00000010876 Papio anubis ENSPANG00000010876 I
ENSPPYG00000017484 Pongo abelii ENSPPYG00000017484 I
ENSPSIG00000011811 Pelodiscus sinensis ENSPSIG00000011811 I
GTF2I Pan troglodytes ENSPTRG00000019293 I
GTF2I Pteropus vampyrus ENSPVAG00000005365 I
Gtf2i Rattus norvegicus ENSRNOG00000001479 I
GTF2I Sus scrofa ENSSSCG00000007721 I
GTF2I Taeniopygia guttata ENSTGUG00000003714 I
GTF2I Vicugna pacos ENSVPAG00000008515 I
Gfo_R013538 Geospiza fortis Gfo_R013538 I
Myotis_brandtii_GTF2I_10014287 Myotis brandtii Myotis_brandtii_GTF2I_10014287 I
Pvit_17518 Pogona vitticeps Pvit_17518 I
Tal_R004165 Tyto alba Tal_R004165 I
gtf2i.S Xenopus laevis XB-GENE-1217444 I
XP_002932326 Xenopus tropicalis XP_002932326 I