SGR5 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT2G01940 T080838_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00		 Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a		 (Direct) (Direct)
SGR5
M06806_2.00		 Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G01940.1 C2H2 ZF 151 172
AT2G01940.1 C2H2 ZF 171 198

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006598 Calypte anna Aan_R006598 I
Afo_R014608 Aptenodytes forsteri Afo_R014608 I
Alligator_sinensis_CCG000787.1 Alligator sinensis Alligator_sinensis_CCG000787.1 I
Brh_R010633 Buceros rhinoceros Brh_R010633 I
CGI_10025278 Crassostrea gigas CGI_10025278 I
Cmyd_10009262 Chelonia mydas Cmyd_10009262 I
ARNTL Anolis carolinensis ENSACAG00000004497 I
ENSAMEG00000002309 Ailuropoda melanoleuca ENSAMEG00000002309 I
ENSAMXG00000010089 Astyanax mexicanus ENSAMXG00000010089 I
ENSAMXG00000011758 Astyanax mexicanus ENSAMXG00000011758 I
ENSAMXG00000020233 Astyanax mexicanus ENSAMXG00000020233 I
ENSAPLG00000003885 Anas platyrhynchos ENSAPLG00000003885 I
ARNTL Bos taurus ENSBTAG00000013029 I
ENSBTAP00000017323-D1 Bos grunniens ENSBTAP00000017323-D1 I
ARNTL Canis familiaris ENSCAFG00000008095 I
ARNTL Choloepus hoffmanni ENSCHOG00000000376 I
ARNTL Callithrix jacchus ENSCJAG00000010162 I
ARNTL Cavia porcellus ENSCPOG00000008795 I
ENSCSAG00000004681 Chlorocebus sabaeus ENSCSAG00000004681 I
arntl1a Danio rerio ENSDARG00000006791 I
arntl1b Danio rerio ENSDARG00000035732 I
arntl2 Danio rerio ENSDARG00000041381 I
ARNTL Dasypus novemcinctus ENSDNOG00000003841 I
Arntl Dipodomys ordii ENSDORG00000015539 I
ARNTL Equus caballus ENSECAG00000012118 I
ENSFALG00000010646 Ficedula albicollis ENSFALG00000010646 I
ARNTL Felis catus ENSFCAG00000010983 I
ARNTL Homo sapiens ENSG00000133794 D
arntl1a Gasterosteus aculeatus ENSGACG00000002445 I
ARNTL Gallus gallus ENSGALG00000005378 I
ARNTL Gorilla gorilla ENSGGOG00000013211 I
ENSGMOG00000008906 Gadus morhua ENSGMOG00000008906 I
ENSLACG00000004629 Latimeria chalumnae ENSLACG00000004629 I
ARNTL Loxodonta africana ENSLAFG00000026673 I
ENSLOCG00000003999 Lepisosteus oculatus ENSLOCG00000003999 I
ARNTL Meleagris gallopavo ENSMGAG00000005349 I
ENSMICG00000001229 Microcebus murinus ENSMICG00000001229 I
ARNTL Myotis lucifugus ENSMLUG00000008503 I
ARNTL Macaca mulatta ENSMMUG00000009690 I
ARNTL Monodelphis domestica ENSMODG00000008708 I
ENSMPUG00000013135 Mustela putorius furo ENSMPUG00000013135 I
Arntl Mus musculus ENSMUSG00000055116 D
ENSNLEG00000017674 Nomascus leucogenys ENSNLEG00000017674 I
ENSOANG00000000503 Ornithorhynchus anatinus ENSOANG00000000503 I
ENSOARG00000007809 Ovis aries ENSOARG00000007809 I
ARNTL Oryctolagus cuniculus ENSOCUG00000005940 I
ARNTL Otolemur garnettii ENSOGAG00000000736 I
ENSONIG00000010970 Oreochromis niloticus ENSONIG00000010970 I
ENSONIG00000014665 Oreochromis niloticus ENSONIG00000014665 I
ARNTL Ochotona princeps ENSOPRG00000004853 I
arntl2 Oryzias latipes ENSORLG00000010946 I
arntl1a Oryzias latipes ENSORLG00000019370 I
ENSP00000384517 Macaca fascicularis ENSP00000384517 I
ENSPFOG00000008027 Poecilia formosa ENSPFOG00000008027 I
ENSPFOG00000016287 Poecilia formosa ENSPFOG00000016287 I
ENSPMAG00000004171 Petromyzon marinus ENSPMAG00000004171 I
ENSPPYG00000003473 Pongo abelii ENSPPYG00000003473 I
ENSPSIG00000013131 Pelodiscus sinensis ENSPSIG00000013131 I
ARNTL Pan troglodytes ENSPTRG00000003376 I
ARNTL Pteropus vampyrus ENSPVAG00000006712 I
Arntl Rattus norvegicus ENSRNOG00000014448 D
ENSSHAG00000017357 Sarcophilus harrisii ENSSHAG00000017357 I
ARNTL Sus scrofa ENSSSCG00000013397 I
ENSSTOG00000022144 Ictidomys tridecemlineatus ENSSTOG00000022144 I
ARNTL Tupaia belangeri ENSTBEG00000017387 I
ENSTGUG00000014839 Taeniopygia guttata ENSTGUG00000014839 I
ENSTGUG00000015954 Taeniopygia guttata ENSTGUG00000015954 I
arntl1a Tetraodon nigroviridis ENSTNIG00000005490 I
arntl2 Tetraodon nigroviridis ENSTNIG00000012142 I
arntl2 Takifugu rubripes ENSTRUG00000007832 I
arntl1a Takifugu rubripes ENSTRUG00000008391 I
ENSTSYG00000000577 Tarsius syrichta ENSTSYG00000000577 I
ARNTL Tursiops truncatus ENSTTRG00000013925 I
ARNTL Vicugna pacos ENSVPAG00000005926 I
ENSXMAG00000001482 Xiphophorus maculatus ENSXMAG00000001482 I
ENSXMAG00000015619 Xiphophorus maculatus ENSXMAG00000015619 I
fgenesh2_pg.scaffold_279000045 Branchiostoma floridae fgenesh2_pg.scaffold_279000045 I
fgenesh2_pg.scaffold_792000016 Branchiostoma floridae fgenesh2_pg.scaffold_792000016 I
Gfo_R013617 Geospiza fortis Gfo_R013617 I
Myotis_brandtii_Arntl_10004678 Myotis brandtii Myotis_brandtii_Arntl_10004678 I
NEMVEDRAFT_v1g132249 Nematostella vectensis NEMVEDRAFT_v1g132249 I
NEMVEDRAFT_v1g224692 Nematostella vectensis NEMVEDRAFT_v1g224692 I
Ocbimv22023737m.g Octopus bimaculoides Ocbimv22023737m.g I
Ogr18318 Ophisaurus gracilis Ogr18318 I
Pvit_10294 Pogona vitticeps Pvit_10294 I
Tal_R003521 Tyto alba Tal_R003521 I
arntl.L Xenopus laevis XB-GENE-17342306 I
arntl Xenopus tropicalis XB-GENE-495455 I
arntl.S Xenopus laevis XB-GENE-495459 I