Alligator_sinensis_CCG000787.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG000787.1 T046621_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arntl
M01751_2.00 		Mus musculus
NCACGTGAYN
NRTCACGTGN		 PBM
Weirauch et al.(2014)
pTH5064 		0.914 0.981
ARNTL
M02787_2.00 		Homo sapiens
GTCACGTGAC
GTCACGTGAC		 SELEX
Jolma et al.(2013)
ARNTL_1 		0.914 0.981
ARNTL
M04124_2.00 		Homo sapiens
RDCACGTGHN
NDCACGTGHY		 SELEX
Yin et al.(2017)
ARNTL_eDBD_HT-SELEX 		0.914 0.981
ARNTL
M08725_2.00 		Homo sapiens
NVDCACGTGBN
NVCACGTGHBN		 Misc
Kulakovskiy et al.(2013)
BMAL1_HUMAN.H11MO.0.A 		0.914 0.981
Arntl
M08776_2.00 		Mus musculus
VCACGTGMN
NKCACGTGB		 Misc
Kulakovskiy et al.(2013)
BMAL1_MOUSE.H11MO.0.A 		0.914 0.981
Arntl
M09478_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Bmal1_GSE39860 		0.914 0.981
Arntl
M09889_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_01 		0.914 0.981
ARNTL
M09841_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_Q6 		0.914 0.981
ARNTL
M04125_2.00 		Homo sapiens
NDCACRTGHY
RDCAYGTGHN		 SELEX
Yin et al.(2017)
ARNTL_eDBD_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG000787.1 bHLH 66 119

Links

Other bHLH family TFs
Other Alligator sinensis TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARNTL Anolis carolinensis ENSACAG00000004497 I 0.914
ENSAMEG00000002309 Ailuropoda melanoleuca ENSAMEG00000002309 I 0.914
ENSAPLG00000003885 Anas platyrhynchos ENSAPLG00000003885 I 0.914
ARNTL Bos taurus ENSBTAG00000013029 I 0.914
ARNTL Canis familiaris ENSCAFG00000008095 I 0.914
ARNTL Choloepus hoffmanni ENSCHOG00000000376 I 0.914
ARNTL Callithrix jacchus ENSCJAG00000010162 I 0.914
ARNTL Cavia porcellus ENSCPOG00000008795 I 0.914
ENSCSAG00000004681 Chlorocebus sabaeus ENSCSAG00000004681 I 0.914
arntl1a Danio rerio ENSDARG00000006791 I 0.914
arntl1b Danio rerio ENSDARG00000035732 I 0.914
ARNTL Dasypus novemcinctus ENSDNOG00000003841 I 0.914
Arntl Dipodomys ordii ENSDORG00000015539 I 0.914
ARNTL Equus caballus ENSECAG00000012118 I 0.914
ENSFALG00000010646 Ficedula albicollis ENSFALG00000010646 I 0.914
ARNTL Felis catus ENSFCAG00000010983 I 0.914
ARNTL Homo sapiens ENSG00000133794 D 0.914
arntl1a Gasterosteus aculeatus ENSGACG00000002445 I 0.914
ARNTL Gallus gallus ENSGALG00000005378 I 0.914
ARNTL Gorilla gorilla ENSGGOG00000013211 I 0.914
ENSGMOG00000008906 Gadus morhua ENSGMOG00000008906 I 0.914
ARNTL Loxodonta africana ENSLAFG00000026673 I 0.914
ENSLOCG00000003999 Lepisosteus oculatus ENSLOCG00000003999 I 0.914
ARNTL Meleagris gallopavo ENSMGAG00000005349 I 0.914
ENSMICG00000001229 Microcebus murinus ENSMICG00000001229 I 0.914
ARNTL Myotis lucifugus ENSMLUG00000008503 I 0.914
ARNTL Macaca mulatta ENSMMUG00000009690 I 0.914
ARNTL Monodelphis domestica ENSMODG00000008708 I 0.914
ENSMPUG00000013135 Mustela putorius furo ENSMPUG00000013135 I 0.914
Arntl Mus musculus ENSMUSG00000055116 D 0.914
ENSNLEG00000017674 Nomascus leucogenys ENSNLEG00000017674 I 0.914
ENSOANG00000000503 Ornithorhynchus anatinus ENSOANG00000000503 I 0.914
ENSOARG00000007809 Ovis aries ENSOARG00000007809 I 0.914
ARNTL Oryctolagus cuniculus ENSOCUG00000005940 I 0.914
ARNTL Otolemur garnettii ENSOGAG00000000736 I 0.914
ENSONIG00000010970 Oreochromis niloticus ENSONIG00000010970 I 0.914
ARNTL Ochotona princeps ENSOPRG00000004853 I 0.914
arntl1a Oryzias latipes ENSORLG00000019370 I 0.914
ENSPFOG00000008027 Poecilia formosa ENSPFOG00000008027 I 0.914
ENSPPYG00000003473 Pongo abelii ENSPPYG00000003473 I 0.914
ENSPSIG00000013131 Pelodiscus sinensis ENSPSIG00000013131 I 0.914
ARNTL Pan troglodytes ENSPTRG00000003376 I 0.914
ARNTL Pteropus vampyrus ENSPVAG00000006712 I 0.914
Arntl Rattus norvegicus ENSRNOG00000014448 D 0.914
ENSSHAG00000017357 Sarcophilus harrisii ENSSHAG00000017357 I 0.914
ARNTL Sus scrofa ENSSSCG00000013397 I 0.914
ENSSTOG00000022144 Ictidomys tridecemlineatus ENSSTOG00000022144 I 0.914
ARNTL Tupaia belangeri ENSTBEG00000017387 I 0.914
ENSTGUG00000014839 Taeniopygia guttata ENSTGUG00000014839 I 0.914
ENSTGUG00000015954 Taeniopygia guttata ENSTGUG00000015954 I 0.914
arntl1a Tetraodon nigroviridis ENSTNIG00000005490 I 0.914
arntl1a Takifugu rubripes ENSTRUG00000008391 I 0.914
ENSTSYG00000000577 Tarsius syrichta ENSTSYG00000000577 I 0.914
ARNTL Tursiops truncatus ENSTTRG00000013925 I 0.914
ARNTL Vicugna pacos ENSVPAG00000005926 I 0.914
ENSXMAG00000015619 Xiphophorus maculatus ENSXMAG00000015619 I 0.914
Aan_R006598 Calypte anna Aan_R006598 I 0.914
Afo_R014608 Aptenodytes forsteri Afo_R014608 I 0.914
Brh_R010633 Buceros rhinoceros Brh_R010633 I 0.914
Cmyd_10009262 Chelonia mydas Cmyd_10009262 I 0.914
ENSBTAP00000017323-D1 Bos grunniens ENSBTAP00000017323-D1 I 0.914
ENSP00000384517 Macaca fascicularis ENSP00000384517 I 0.914
Gfo_R013617 Geospiza fortis Gfo_R013617 I 0.914
Myotis_brandtii_Arntl_10004678 Myotis brandtii Myotis_brandtii_Arntl_10004678 I 0.914
Ogr18318 Ophisaurus gracilis Ogr18318 I 0.914
Pvit_10294 Pogona vitticeps Pvit_10294 I 0.914
Tal_R003521 Tyto alba Tal_R003521 I 0.914
arntl.L Xenopus laevis XB-GENE-17342306 I 0.914
arntl Xenopus tropicalis XB-GENE-495455 I 0.914
arntl.S Xenopus laevis XB-GENE-495459 I 0.914
ENSAMXG00000011758 Astyanax mexicanus ENSAMXG00000011758 I 0.912
fgenesh2_pg.scaffold_279000045 Branchiostoma floridae fgenesh2_pg.scaffold_279000045 I 0.879
fgenesh2_pg.scaffold_792000016 Branchiostoma floridae fgenesh2_pg.scaffold_792000016 I 0.879
Ocbimv22023737m.g Octopus bimaculoides Ocbimv22023737m.g I 0.879
ENSAMXG00000010089 Astyanax mexicanus ENSAMXG00000010089 I 0.871
ENSLACG00000004629 Latimeria chalumnae ENSLACG00000004629 I 0.871
ENSPMAG00000004171 Petromyzon marinus ENSPMAG00000004171 I 0.868
CGI_10025278 Crassostrea gigas CGI_10025278 I 0.858
NEMVEDRAFT_v1g132249 Nematostella vectensis NEMVEDRAFT_v1g132249 I 0.858
NEMVEDRAFT_v1g224692 Nematostella vectensis NEMVEDRAFT_v1g224692 I 0.858
ENSAMXG00000020233 Astyanax mexicanus ENSAMXG00000020233 I 0.839
arntl2 Danio rerio ENSDARG00000041381 I 0.839
ENSONIG00000014665 Oreochromis niloticus ENSONIG00000014665 I 0.839
arntl2 Oryzias latipes ENSORLG00000010946 I 0.839
ENSPFOG00000016287 Poecilia formosa ENSPFOG00000016287 I 0.839
arntl2 Tetraodon nigroviridis ENSTNIG00000012142 I 0.839
arntl2 Takifugu rubripes ENSTRUG00000007832 I 0.839
ENSXMAG00000001482 Xiphophorus maculatus ENSXMAG00000001482 I 0.839