CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

snai3 *(Danio rerio)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	ENSDARG00000031243	T090879_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
SNAI1 M04441_2.00	Homo sapiens	NVCACCTGYN	NRCAGGTGBN	SELEX Yin et al.(2017) SNAI1_eDBD_HT-SELEX	0.757	0.833
SNAI1 M04443_2.00	Homo sapiens	TRCACCTGYN	NRCAGGTGYA	SELEX Yin et al.(2017) SNAI1_FL_HT-SELEX	0.757	0.833
SNAI1 M08303_2.00	Homo sapiens	NNNNGCACCTGCYNB	VNRGCAGGTGCNNNN	ChIP-seq Schmitges et al.(2016) O95863.MEME	0.757	0.833
SNAI1 M08886_2.00	Homo sapiens	VCACCTGB	VCAGGTGB	Misc Kulakovskiy et al.(2013) SNAI1_HUMAN.H11MO.0.C	0.757	0.833
SNAI1 M10201_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SNA_Q4	0.757	0.833
SNAI1 M10202_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SNA_Q6	0.757	0.833
SNAI1 M04442_2.00	Homo sapiens	NRCACCTGYN	NRCAGGTGYN	SELEX Yin et al.(2017) SNAI1_eDBD_Methyl-HT-SELEX	0.757	0.833
SNAI1 M04444_2.00	Homo sapiens	YRCACCTGYN	NRCAGGTGYR	SELEX Yin et al.(2017) SNAI1_FL_Methyl-HT-SELEX	0.757	0.833
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Links
Other C2H2 ZF family TFs
Other *Danio rerio* TFs