Prdm1 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000000323 T108851_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.827 1.000
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.825 0.982
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.825 0.982
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.825 0.982
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.825 0.982
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.825 0.982
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.825 0.982
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.825 0.982
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.825 0.982
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.825 0.982
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.825 0.982
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.825 0.982
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.825 0.982
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.825 0.982
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.825 0.982
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.825 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000040939 C2H2 ZF 574 596
ENSRNOP00000040939 C2H2 ZF 602 624
ENSRNOP00000040939 C2H2 ZF 630 652
ENSRNOP00000040939 C2H2 ZF 658 680
ENSRNOP00000040939 C2H2 ZF 686 707
ENSRNOP00000068267 C2H2 ZF 607 629
ENSRNOP00000068267 C2H2 ZF 635 657
ENSRNOP00000068267 C2H2 ZF 663 685
ENSRNOP00000068267 C2H2 ZF 691 713
ENSRNOP00000068267 C2H2 ZF 719 740

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG005405.1 Alligator sinensis Alligator_sinensis_CCG005405.1 I
Cmyd_10004697 Chelonia mydas Cmyd_10004697 I
ZNF740 Anolis carolinensis ENSACAG00000006993 I
ENSAMEG00000012221 Ailuropoda melanoleuca ENSAMEG00000012221 I
ENSAMXG00000004859 Astyanax mexicanus ENSAMXG00000004859 I
ENSBTAG00000016502 Bos taurus ENSBTAG00000016502 I
ENSBTAG00000046481 Bos taurus ENSBTAG00000046481 I
ENSBTAP00000021935-D1 Bos grunniens ENSBTAP00000021935-D1 I
ENSBTAP00000048192-D3 Bos grunniens ENSBTAP00000048192-D3 I
ZNF740 Canis familiaris ENSCAFG00000007070 I
ZNF740 Callithrix jacchus ENSCJAG00000018381 I
ENSCPOG00000014815 Cavia porcellus ENSCPOG00000014815 I
ENSCSAG00000005533 Chlorocebus sabaeus ENSCSAG00000005533 I
znf740b Danio rerio ENSDARG00000061174 I
ZNF740 Dasypus novemcinctus ENSDNOG00000033888 I
ENSDORG00000002972 Dipodomys ordii ENSDORG00000002972 I
ZNF740 Equus caballus ENSECAG00000013071 I
ZNF740 Echinops telfairi ENSETEG00000006127 I
ENSFALG00000004356 Ficedula albicollis ENSFALG00000004356 I
ZNF740 Felis catus ENSFCAG00000005868 I
ZNF740 Homo sapiens ENSG00000139651 D
ENSGALG00000026752 Gallus gallus ENSGALG00000026752 I
ZNF740 Gorilla gorilla ENSGGOG00000006790 I
ZNF740 Loxodonta africana ENSLAFG00000009191 I
ENSLOCG00000006558 Lepisosteus oculatus ENSLOCG00000006558 I
ENSMEUG00000003745 Macropus eugenii ENSMEUG00000003745 I
ZNF740 Microcebus murinus ENSMICG00000014191 I
ZNF740 Myotis lucifugus ENSMLUG00000017275 I
ZNF740 Macaca mulatta ENSMMUG00000005246 I
ENSMMUP00000006945 Macaca fascicularis ENSMMUP00000006945 I
Zfp740 Mus musculus ENSMUSG00000046897 D
ENSNLEG00000017717 Nomascus leucogenys ENSNLEG00000017717 I
ZNF740 Oryctolagus cuniculus ENSOCUG00000001422 I
ZNF740 Otolemur garnettii ENSOGAG00000025330 I
ENSPANG00000018242 Papio anubis ENSPANG00000018242 I
ENSPFOG00000001757 Poecilia formosa ENSPFOG00000001757 I
ENSPPYG00000004570 Pongo abelii ENSPPYG00000004570 I
ZNF740 Pan troglodytes ENSPTRG00000005005 I
Znf740 Rattus norvegicus ENSRNOG00000012192 I
ZNF740 Sorex araneus ENSSARG00000012946 I
ENSSHAG00000000623 Sarcophilus harrisii ENSSHAG00000000623 I
ENSSSCG00000000256 Sus scrofa ENSSSCG00000000256 I
ENSSTOG00000011188 Ictidomys tridecemlineatus ENSSTOG00000011188 I
ZNF740 Tupaia belangeri ENSTBEG00000015437 I
ENSTSYG00000010942 Tarsius syrichta ENSTSYG00000010942 I
ZNF740 Tursiops truncatus ENSTTRG00000002776 I
Gfo_R004393 Geospiza fortis Gfo_R004393 I
Myotis_brandtii_ZNF740_10023006 Myotis brandtii Myotis_brandtii_ZNF740_10023006 I
znf740 Xenopus tropicalis XB-GENE-1219010 I
znf740.S Xenopus laevis XB-GENE-1219015 I