ENSSSCG00000026570 (Sus scrofa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSSSCG00000026570 T110551_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.819 0.974
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.819 0.974
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.819 0.974
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.819 0.974
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.819 0.974
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.819 0.974
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.819 0.974
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.819 0.974
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.819 0.974
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.819 0.974
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.819 0.974
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.819 0.974
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.815 0.965
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000006683 C2H2 ZF 128 150
ENSSSCP00000006683 C2H2 ZF 159 181
ENSSSCP00000006683 C2H2 ZF 185 207
ENSSSCP00000006683 C2H2 ZF 213 235
ENSSSCP00000006683 C2H2 ZF 241 262

Links

Other C2H2 ZF family TFs
Other Sus scrofa TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m006159 Ricinus communis 29908.m006159 N 0.000
Aquca_014_00175 Aquilegia coerulea Aquca_014_00175 N 0.000
cassava32027.m1 Manihot esculenta cassava32027.m1 N 0.000
cassava44367.m1 Manihot esculenta cassava44367.m1 N 0.000
Ca_26279 Cicer arietinum Ca_26279 N 0.000
Ciclev10000940m.g Citrus clementina Ciclev10000940m.g N 0.000
Eucgr.L03490 Eucalyptus grandis Eucgr.L03490 N 0.000
evm.TU.supercontig_36.32 Carica papaya evm.TU.supercontig_36.32 N 0.000
gene11137-v1.0-hybrid Fragaria vesca gene11137-v1.0-hybrid N 0.000
GLYMA04G43090 Glycine max GLYMA04G43090 N 0.000
GLYMA06G11610 Glycine max GLYMA06G11610 N 0.000
Gorai.009G244200 Gossypium raimondii Gorai.009G244200 N 0.000
Gorai.010G048800 Gossypium raimondii Gorai.010G048800 N 0.000
LjT15C06.70.nc Lotus japonicus LjT15C06.70.nc N 0.000
LjT26J05.10.nc Lotus japonicus LjT26J05.10.nc N 0.000
Lus10008316.g Linum usitatissimum Lus10008316.g N 0.000
Lus10028056.g Linum usitatissimum Lus10028056.g N 0.000
MDP0000319342 Malus domestica MDP0000319342 N 0.000
MDP0000884524 Malus domestica MDP0000884524 N 0.000
MTR_3g072710 Medicago truncatula MTR_3g072710 N 0.000
orange1.1g011012m.g Citrus sinensis orange1.1g011012m.g N 0.000
PGSC0003DMG400012071 Solanum tuberosum PGSC0003DMG400012071 N 0.000
Pm004863 Prunus mume Pm004863 N 0.000
POPTR_0002s08660 Populus trichocarpa POPTR_0002s08660 N 0.000
POPTR_0005s15900 Populus trichocarpa POPTR_0005s15900 N 0.000
PRUPE_ppa018977mg Prunus persica PRUPE_ppa018977mg N 0.000
SapurV1A.0105s0110 Salix purpurea SapurV1A.0105s0110 N 0.000
Solyc11g013150.1 Solanum lycopersicum Solyc11g013150.1 N 0.000
TCM_035069 Theobroma cacao TCM_035069 N 0.000
VIT_18s0001g03310 Vitis vinifera VIT_18s0001g03310 N 0.000