MTR_0160s0030 (Medicago truncatula)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 MTR_0160s0030 T123761_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.811 0.891
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.811 0.891
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.793 0.717
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.787 0.826
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.770 0.696
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.770 0.696
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.770 0.696
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.769 0.674
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.760 0.696
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.760 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH16508 C2H2 ZF 240 262
KEH16508 C2H2 ZF 286 308

Links

Other C2H2 ZF family TFs
Other Medicago truncatula TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015695 Calypte anna Aan_R015695 I 0.000
Afo_R010468 Aptenodytes forsteri Afo_R010468 I 0.000
Alligator_sinensis_CCG000346.1 Alligator sinensis Alligator_sinensis_CCG000346.1 N 0.000
Cmyd_10009547 Chelonia mydas Cmyd_10009547 I 0.000
ENSAMXG00000016370 Astyanax mexicanus ENSAMXG00000016370 I 0.000
ENSCAFG00000007099 Canis familiaris ENSCAFG00000007099 I 0.000
IRF4 Choloepus hoffmanni ENSCHOG00000012417 I 0.000
IRF8 Equus caballus ENSECAG00000015449 I 0.000
irf4b Gasterosteus aculeatus ENSGACG00000004966 I 0.000
ENSLOCG00000001187 Lepisosteus oculatus ENSLOCG00000001187 I 0.000
ENSMICG00000011721 Microcebus murinus ENSMICG00000011721 I 0.000
ENSMPUG00000008641 Mustela putorius furo ENSMPUG00000008641 I 0.000
IRF8 Ornithorhynchus anatinus ENSOANG00000003741 I 0.000
IRF4 Ornithorhynchus anatinus ENSOANG00000006326 I 0.000
IRF8 Otolemur garnettii ENSOGAG00000009262 I 0.000
irf4b Oryzias latipes ENSORLG00000012712 I 0.000
irf8 Oryzias latipes ENSORLG00000018216 I 0.000
ENSP00000370343 Macaca fascicularis ENSP00000370343 I 0.000
ENSPANG00000023389 Papio anubis ENSPANG00000023389 I 0.000
ENSPSIG00000003518 Pelodiscus sinensis ENSPSIG00000003518 I 0.000
ENSSSCG00000023184 Sus scrofa ENSSSCG00000023184 I 0.000
ENSSSCG00000025716 Sus scrofa ENSSSCG00000025716 I 0.000
irf4a Tetraodon nigroviridis ENSTNIG00000005370 I 0.000
irf8 Tetraodon nigroviridis ENSTNIG00000009283 I 0.000
irf4b Takifugu rubripes ENSTRUG00000002946 I 0.000
ENSTSYG00000006495 Tarsius syrichta ENSTSYG00000006495 I 0.000
IRF8 Tursiops truncatus ENSTTRG00000016024 I 0.000
Gfo_R005312 Geospiza fortis Gfo_R005312 I 0.000
Ogr05775 Ophisaurus gracilis Ogr05775 I 0.000
Tal_R010571 Tyto alba Tal_R010571 I 0.000
XP_002934991 Xenopus tropicalis XP_002934991 I 0.000