Ppa-odd-1 (Pristionchus pacificus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PPA09938 T127022_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
odd-2
M00618_2.00 		Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN		 PBM
Narasimhan et al.(2015)
pTH9150 		0.766 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA09938 C2H2 ZF 123 145
PPA09938 C2H2 ZF 151 173
PPA09938 C2H2 ZF 179 201

Links

Other C2H2 ZF family TFs
Other Pristionchus pacificus TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g097370 Brassica oleracea Bo7g097370 I
Bostr.10199s0043 Boechera stricta Bostr.10199s0043 I
Bostr.22157s0123 Boechera stricta Bostr.22157s0123 I
Bra009715 Brassica rapa Bra009715 I
Cagra.0086s0019 Capsella grandiflora Cagra.0086s0019 I
Carubv10000909m.g Capsella rubella Carubv10000909m.g I
fgenesh2_kg.6__2388__AT5G23930.1 Arabidopsis lyrata fgenesh2_kg.6__2388__AT5G23930.1 I
Thhalv10004187m.g Eutrema salsugineum Thhalv10004187m.g I