Alligator_sinensis_CCG005405.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG005405.1 T133134_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zfp740
M00784_2.00 		Mus musculus
MCCCCCCNHN
NDNGGGGGGK		 PBM
Weirauch et al.(2013)
pTH2857 		0.827 0.941
Zfp740
M00143_2.00 		Mus musculus
HMCCCCCNNN
NNNGGGGGKD		 PBM
Badis et al.(2009)
Zfp740_0925 		0.827 0.941
Zfp740
M02935_2.00 		Mus musculus
NCCCCCCCAH
DTGGGGGGGN		 SELEX
Jolma et al.(2013)
Zfp740_1 		0.827 0.941
ZNF740
M02891_2.00 		Homo sapiens
VCCCCCCCMY
RKGGGGGGGB		 SELEX
Jolma et al.(2013)
ZNF740_1 		0.807 0.926
ZNF740
M02892_2.00 		Homo sapiens
VCCCCCCCAY
RTGGGGGGGB		 SELEX
Jolma et al.(2013)
ZNF740_2 		0.807 0.926
ZNF740
M04467_2.00 		Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN		 SELEX
Yin et al.(2017)
ZNF740_eDBD_HT-SELEX 		0.807 0.926
ZNF740
M04469_2.00 		Homo sapiens
NYNCCCCCCCCAC
GTGGGGGGGGNRN		 SELEX
Yin et al.(2017)
ZNF740_FL_HT-SELEX 		0.807 0.926
ZNF740
M10221_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF740_02 		0.807 0.926
ZNF740
M04468_2.00 		Homo sapiens
YYDCCCCCCCCAY
RTGGGGGGGGHRR		 SELEX
Yin et al.(2017)
ZNF740_eDBD_Methyl-HT-SELEX 		0.807 0.926
ZNF740
M04470_2.00 		Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN		 SELEX
Yin et al.(2017)
ZNF740_FL_Methyl-HT-SELEX 		0.807 0.926
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005405.1 C2H2 ZF 65 87
Alligator_sinensis_CCG005405.1 C2H2 ZF 93 115
Alligator_sinensis_CCG005405.1 C2H2 ZF 121 142

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10004697 Chelonia mydas Cmyd_10004697 I 0.823
ZNF740 Anolis carolinensis ENSACAG00000006993 I 0.827
ENSAMEG00000012221 Ailuropoda melanoleuca ENSAMEG00000012221 I 0.823
ENSBTAG00000016502 Bos taurus ENSBTAG00000016502 I 0.801
ENSBTAP00000021935-D1 Bos grunniens ENSBTAP00000021935-D1 I 0.807
ENSBTAP00000048192-D3 Bos grunniens ENSBTAP00000048192-D3 I 0.807
ZNF740 Canis familiaris ENSCAFG00000007070 I 0.823
ZNF740 Callithrix jacchus ENSCJAG00000018381 I 0.807
ENSCPOG00000014815 Cavia porcellus ENSCPOG00000014815 I 0.823
ENSCSAG00000005533 Chlorocebus sabaeus ENSCSAG00000005533 I 0.785
ZNF740 Dasypus novemcinctus ENSDNOG00000033888 I 0.823
ENSDORG00000002972 Dipodomys ordii ENSDORG00000002972 I 0.827
ZNF740 Equus caballus ENSECAG00000013071 I 0.807
ZNF740 Echinops telfairi ENSETEG00000006127 I 0.827
ENSFALG00000004356 Ficedula albicollis ENSFALG00000004356 I 0.820
ZNF740 Felis catus ENSFCAG00000005868 I 0.823
ZNF740 Homo sapiens ENSG00000139651 D 0.807
ENSGALG00000026752 Gallus gallus ENSGALG00000026752 I 0.823
ZNF740 Gorilla gorilla ENSGGOG00000006790 I 0.807
ZNF740 Loxodonta africana ENSLAFG00000009191 I 0.820
ENSMEUG00000003745 Macropus eugenii ENSMEUG00000003745 I 0.823
ZNF740 Microcebus murinus ENSMICG00000014191 I 0.791
ZNF740 Myotis lucifugus ENSMLUG00000017275 I 0.811
ZNF740 Macaca mulatta ENSMMUG00000005246 I 0.807
ENSMMUP00000006945 Macaca fascicularis ENSMMUP00000006945 I 0.807
Zfp740 Mus musculus ENSMUSG00000046897 D 0.827
ENSNLEG00000017717 Nomascus leucogenys ENSNLEG00000017717 I 0.807
ZNF740 Oryctolagus cuniculus ENSOCUG00000001422 I 0.811
ZNF740 Otolemur garnettii ENSOGAG00000025330 I 0.807
ENSPANG00000018242 Papio anubis ENSPANG00000018242 I 0.807
ENSPPYG00000004570 Pongo abelii ENSPPYG00000004570 I 0.807
ENSPSIG00000003019 Pelodiscus sinensis ENSPSIG00000003019 I 0.827
ZNF740 Pan troglodytes ENSPTRG00000005005 I 0.807
Znf740 Rattus norvegicus ENSRNOG00000012192 I 0.827
ZNF740 Sorex araneus ENSSARG00000012946 I 0.807
ENSSHAG00000000623 Sarcophilus harrisii ENSSHAG00000000623 I 0.823
ENSSSCG00000000256 Sus scrofa ENSSSCG00000000256 I 0.807
ENSSTOG00000011188 Ictidomys tridecemlineatus ENSSTOG00000011188 I 0.823
ZNF740 Tupaia belangeri ENSTBEG00000015437 I 0.823
ENSTSYG00000010942 Tarsius syrichta ENSTSYG00000010942 I 0.807
ZNF740 Tursiops truncatus ENSTTRG00000002776 I 0.807
Gfo_R004393 Geospiza fortis Gfo_R004393 I 0.820
Myotis_brandtii_ZNF740_10023006 Myotis brandtii Myotis_brandtii_ZNF740_10023006 I 0.811
znf740 Xenopus tropicalis XB-GENE-1219010 I 0.803
znf740.S Xenopus laevis XB-GENE-1219015 I 0.803