Gfo_R000617 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R000617 T135649_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R000617 C2H2 ZF 420 442
Gfo_R000617 C2H2 ZF 448 470
Gfo_R000617 C2H2 ZF 687 708
Gfo_R000617 C2H2 ZF 714 736
Gfo_R000617 C2H2 ZF 746 768
Gfo_R000617 C2H2 ZF 992 1014
Gfo_R000617 C2H2 ZF 1020 1042
Gfo_R000617 C2H2 ZF 1128 1150
Gfo_R000617 C2H2 ZF 1156 1178

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R009325 Aptenodytes forsteri Afo_R009325 N 0.827
Alligator_sinensis_CCG003694.1 Alligator sinensis Alligator_sinensis_CCG003694.1 N 0.827
Brh_R007854 Buceros rhinoceros Brh_R007854 N 0.827
Cmyd_10010411 Chelonia mydas Cmyd_10010411 N 0.822
SALL3 Callithrix jacchus ENSCJAG00000007332 N 0.822
ENSCSAG00000018244 Chlorocebus sabaeus ENSCSAG00000018244 N 0.822
SALL3 Dasypus novemcinctus ENSDNOG00000025483 N 0.814
Sall3 Dipodomys ordii ENSDORG00000002702 N 0.791
SALL3 Homo sapiens ENSG00000256463 N 0.822
sall1a Gasterosteus aculeatus ENSGACG00000016702 N 0.759
SALL3 Gorilla gorilla ENSGGOG00000008127 N 0.822
SALL3 Loxodonta africana ENSLAFG00000013521 N 0.820
ENSLOCG00000007283 Lepisosteus oculatus ENSLOCG00000007283 N 0.760
SALL3 Myotis lucifugus ENSMLUG00000010582 N 0.802
SALL3 Macaca mulatta ENSMMUG00000000286 N 0.822
ENSNLEG00000008217 Nomascus leucogenys ENSNLEG00000008217 N 0.790
SALL1 Ornithorhynchus anatinus ENSOANG00000013399 N 0.773
ENSOARG00000004353 Ovis aries ENSOARG00000004353 N 0.798
SALL1 Otolemur garnettii ENSOGAG00000027316 N 0.768
SALL3 Otolemur garnettii ENSOGAG00000031681 N 0.822
ENSONIG00000002831 Oreochromis niloticus ENSONIG00000002831 N 0.765
sall1a Oryzias latipes ENSORLG00000013827 N 0.758
ENSP00000299466-D1 Bos grunniens ENSP00000299466-D1 N 0.810
SALL3 Procavia capensis ENSPCAG00000006522 N 0.817
ENSPFOG00000015799 Poecilia formosa ENSPFOG00000015799 N 0.759
Sall1 Rattus norvegicus ENSRNOG00000013907 N 0.768
Sall3 Rattus norvegicus ENSRNOG00000026116 N 0.825
SALL3 Sus scrofa ENSSSCG00000004858 N 0.809
sall1a Tetraodon nigroviridis ENSTNIG00000004257 N 0.765
sall1a Takifugu rubripes ENSTRUG00000008950 N 0.765
ENSXMAG00000016273 Xiphophorus maculatus ENSXMAG00000016273 N 0.759
Myotis_brandtii_Sall3_10034211 Myotis brandtii Myotis_brandtii_Sall3_10034211 N 0.802
Ogr15828 Ophisaurus gracilis Ogr15828 N 0.827
Tal_R008175 Tyto alba Tal_R008175 N 0.827
sall1 Xenopus tropicalis XB-GENE-491393 N 0.768
sall1.L Xenopus laevis XB-GENE-866060 N 0.766
XP_002936493 Xenopus tropicalis XP_002936493 N 0.821
XP_002936494 Xenopus tropicalis XP_002936494 N 0.821
XP_002936495 Xenopus tropicalis XP_002936495 N 0.821