CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R004393
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R004393
T135707_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zfp740
M00784_2.00
Mus musculus
MCCCCCCNHN
NDNGGGGGGK
PBM
Weirauch et al.(2013)
pTH2857
0.820
0.926
Zfp740
M00143_2.00
Mus musculus
HMCCCCCNNN
NNNGGGGGKD
PBM
Badis et al.(2009)
Zfp740_0925
0.820
0.926
Zfp740
M02935_2.00
Mus musculus
NCCCCCCCAH
DTGGGGGGGN
SELEX
Jolma et al.(2013)
Zfp740_1
0.820
0.926
ZNF740
M02891_2.00
Homo sapiens
VCCCCCCCMY
RKGGGGGGGB
SELEX
Jolma et al.(2013)
ZNF740_1
0.804
0.926
ZNF740
M02892_2.00
Homo sapiens
VCCCCCCCAY
RTGGGGGGGB
SELEX
Jolma et al.(2013)
ZNF740_2
0.804
0.926
ZNF740
M04467_2.00
Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN
SELEX
Yin et al.(2017)
ZNF740_eDBD_HT-SELEX
0.804
0.926
ZNF740
M04469_2.00
Homo sapiens
NYNCCCCCCCCAC
GTGGGGGGGGNRN
SELEX
Yin et al.(2017)
ZNF740_FL_HT-SELEX
0.804
0.926
ZNF740
M10221_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZNF740_02
0.804
0.926
ZNF740
M04468_2.00
Homo sapiens
YYDCCCCCCCCAY
RTGGGGGGGGHRR
SELEX
Yin et al.(2017)
ZNF740_eDBD_Methyl-HT-SELEX
0.804
0.926
ZNF740
M04470_2.00
Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN
SELEX
Yin et al.(2017)
ZNF740_FL_Methyl-HT-SELEX
0.804
0.926
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R004393
C2H2 ZF
16
38
FICDHCFGAFRSSYHLKRHILIH
Gfo_R004393
C2H2 ZF
44
66
FECDMCDMRFIQKYHLERHKRVH
Gfo_R004393
C2H2 ZF
72
93
YQCERCMQSFSRTDRLLRHKRM
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG005405.1
Alligator sinensis
Alligator_sinensis_CCG005405.1
I
0.820
Cmyd_10004697
Chelonia mydas
Cmyd_10004697
I
0.820
ZNF740
Anolis carolinensis
ENSACAG00000006993
I
0.820
ENSAMEG00000012221
Ailuropoda melanoleuca
ENSAMEG00000012221
I
0.820
ENSAMXG00000004859
Astyanax mexicanus
ENSAMXG00000004859
I
0.768
ENSBTAG00000016502
Bos taurus
ENSBTAG00000016502
I
0.797
ENSBTAG00000046481
Bos taurus
ENSBTAG00000046481
I
0.804
ENSBTAP00000021935-D1
Bos grunniens
ENSBTAP00000021935-D1
I
0.804
ENSBTAP00000048192-D3
Bos grunniens
ENSBTAP00000048192-D3
I
0.804
ZNF740
Canis familiaris
ENSCAFG00000007070
I
0.820
ZNF740
Callithrix jacchus
ENSCJAG00000018381
I
0.804
ENSCPOG00000014815
Cavia porcellus
ENSCPOG00000014815
I
0.820
ENSCSAG00000005533
Chlorocebus sabaeus
ENSCSAG00000005533
I
0.781
znf740b
Danio rerio
ENSDARG00000061174
I
0.771
ZNF740
Dasypus novemcinctus
ENSDNOG00000033888
I
0.820
ENSDORG00000002972
Dipodomys ordii
ENSDORG00000002972
I
0.820
ZNF740
Equus caballus
ENSECAG00000013071
I
0.804
ZNF740
Echinops telfairi
ENSETEG00000006127
I
0.820
ENSFALG00000004356
Ficedula albicollis
ENSFALG00000004356
I
0.827
ZNF740
Felis catus
ENSFCAG00000005868
I
0.820
ZNF740
Homo sapiens
ENSG00000139651
D
0.804
znf740b
Gasterosteus aculeatus
ENSGACG00000009456
N
0.758
ENSGALG00000026752
Gallus gallus
ENSGALG00000026752
I
0.816
ZNF740
Gorilla gorilla
ENSGGOG00000006790
I
0.804
ZNF740
Loxodonta africana
ENSLAFG00000009191
I
0.820
ENSMEUG00000003745
Macropus eugenii
ENSMEUG00000003745
I
0.816
ZNF740
Microcebus murinus
ENSMICG00000014191
I
0.788
ZNF740
Myotis lucifugus
ENSMLUG00000017275
I
0.804
ZNF740
Macaca mulatta
ENSMMUG00000005246
I
0.804
ENSMMUP00000006945
Macaca fascicularis
ENSMMUP00000006945
I
0.804
Zfp740
Mus musculus
ENSMUSG00000046897
D
0.820
ENSNLEG00000017717
Nomascus leucogenys
ENSNLEG00000017717
I
0.804
ZNF740
Oryctolagus cuniculus
ENSOCUG00000001422
I
0.804
ZNF740
Otolemur garnettii
ENSOGAG00000025330
I
0.804
ENSONIG00000012259
Oreochromis niloticus
ENSONIG00000012259
N
0.758
znf740b
Oryzias latipes
ENSORLG00000008031
N
0.758
ENSPANG00000018242
Papio anubis
ENSPANG00000018242
I
0.804
ENSPFOG00000001571
Poecilia formosa
ENSPFOG00000001571
N
0.758
ENSPFOG00000001757
Poecilia formosa
ENSPFOG00000001757
I
0.765
ENSPPYG00000004570
Pongo abelii
ENSPPYG00000004570
I
0.804
ENSPSIG00000003019
Pelodiscus sinensis
ENSPSIG00000003019
I
0.820
ZNF740
Pan troglodytes
ENSPTRG00000005005
I
0.804
Znf740
Rattus norvegicus
ENSRNOG00000012192
I
0.820
ZNF740
Sorex araneus
ENSSARG00000012946
I
0.804
ENSSHAG00000000623
Sarcophilus harrisii
ENSSHAG00000000623
I
0.816
ENSSSCG00000000256
Sus scrofa
ENSSSCG00000000256
I
0.804
ENSSTOG00000011188
Ictidomys tridecemlineatus
ENSSTOG00000011188
I
0.820
ZNF740
Tupaia belangeri
ENSTBEG00000015437
I
0.820
znf740b
Tetraodon nigroviridis
ENSTNIG00000015044
N
0.758
znf740b
Takifugu rubripes
ENSTRUG00000001712
N
0.758
ENSTSYG00000010942
Tarsius syrichta
ENSTSYG00000010942
I
0.804
ZNF740
Tursiops truncatus
ENSTTRG00000002776
I
0.804
ENSXMAG00000008098
Xiphophorus maculatus
ENSXMAG00000008098
N
0.758
Myotis_brandtii_ZNF740_10023006
Myotis brandtii
Myotis_brandtii_ZNF740_10023006
I
0.804
znf740
Xenopus tropicalis
XB-GENE-1219010
I
0.804
znf740.S
Xenopus laevis
XB-GENE-1219015
I
0.804