Carubv10001157m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10001157m.g T142691_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.804 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001157m C2H2 ZF 79 103
Carubv10001157m C2H2 ZF 108 132
Carubv10001157m C2H2 ZF 138 162
Carubv10001157m C2H2 ZF 168 193
Carubv10001157m C2H2 ZF 230 255

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000589 Ailuropoda melanoleuca ENSAMEG00000000589 I
ZBTB32 Bos taurus ENSBTAG00000023611 I
ZBTB32 Choloepus hoffmanni ENSCHOG00000001017 I
KMT2B Callithrix jacchus ENSCJAG00000010126 I
ENSCPOG00000003713 Cavia porcellus ENSCPOG00000003713 I
ENSDORG00000009058 Dipodomys ordii ENSDORG00000009058 I
ZBTB32 Felis catus ENSFCAG00000006380 I
ZBTB32 Homo sapiens ENSG00000011590 D
ZBTB32 Gorilla gorilla ENSGGOG00000016789 I
ZBTB32 Loxodonta africana ENSLAFG00000018739 I
ZBTB32 Myotis lucifugus ENSMLUG00000011396 I
ENSMPUG00000006234 Mustela putorius furo ENSMPUG00000006234 I
Zbtb32 Mus musculus ENSMUSG00000006310 I
ENSNLEG00000011302 Nomascus leucogenys ENSNLEG00000011302 I
ZBTB32 Oryctolagus cuniculus ENSOCUG00000012760 I
ZBTB32 Otolemur garnettii ENSOGAG00000004155 I
ENSP00000376035-D1 Bos grunniens ENSP00000376035-D1 I
ENSPPYG00000009876 Pongo abelii ENSPPYG00000009876 I
ZBTB32 Pan troglodytes ENSPTRG00000010857 I
ZBTB32 Pteropus vampyrus ENSPVAG00000012825 I
Zbtb32 Rattus norvegicus ENSRNOG00000042465 I
ZBTB32 Sus scrofa ENSSSCG00000002908 I
ENSSTOG00000021374 Ictidomys tridecemlineatus ENSSTOG00000021374 I
ZBTB32 Tupaia belangeri ENSTBEG00000006535 I
Myotis_brandtii_ZBTB32_10035155 Myotis brandtii Myotis_brandtii_ZBTB32_10035155 I