Pavir.J38242 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J38242 T143434_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J38242.1.p C2H2 ZF 496 519
Pavir.J38242.1.p C2H2 ZF 520 543
Pavir.J38242.1.p C2H2 ZF 549 573
Pavir.J38242.1.p C2H2 ZF 579 602

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28179.m000458 Ricinus communis 28179.m000458 N
AMTR_s00044p00144500 Amborella trichopoda AMTR_s00044p00144500 N
AT3G53440 Arabidopsis thaliana AT3G53440 N
Bo8g082840 Brassica oleracea Bo8g082840 N
Bostr.11793s0050 Boechera stricta Bostr.11793s0050 N
BRADI3G07987 Brachypodium distachyon BRADI3G07987 N
Cagra.0612s0070 Capsella grandiflora Cagra.0612s0070 N
Carubv10016941m.g Capsella rubella Carubv10016941m.g N
evm.TU.supercontig_129.20 Carica papaya evm.TU.supercontig_129.20 N
fgenesh2_kg.5__1710__AT3G53440.2 Arabidopsis lyrata fgenesh2_kg.5__1710__AT3G53440.2 N
Lus10002159.g Linum usitatissimum Lus10002159.g N
MDP0000312273 Malus domestica MDP0000312273 N
mgf021292m Mimulus guttatus mgf021292m N
MTR_7g076850 Medicago truncatula MTR_7g076850 N
OBART01G20650 Oryza barthii OBART01G20650 N
OGLUM01G24300 Oryza glumaepatula OGLUM01G24300 N
ONIVA01G23240 Oryza nivara ONIVA01G23240 N
OPUNC01G20840 Oryza punctata OPUNC01G20840 N
ORUFI01G23320 Oryza rufipogon ORUFI01G23320 N
PK06741.1 Cannabis sativa PK06741.1 N
Pm002284 Prunus mume Pm002284 N
POPTR_0018s04230 Populus trichocarpa POPTR_0018s04230 N
PRUPE_ppa003947mg Prunus persica PRUPE_ppa003947mg N
SapurV1A.0493s0270 Salix purpurea SapurV1A.0493s0270 N
Thhalv10010289m.g Eutrema salsugineum Thhalv10010289m.g N
VIT_17s0000g03540 Vitis vinifera VIT_17s0000g03540 N