Thhalv10028723m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10028723m.g T143584_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.816 0.948
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028723m C2H2 ZF 79 103
Thhalv10028723m C2H2 ZF 108 132
Thhalv10028723m C2H2 ZF 138 162
Thhalv10028723m C2H2 ZF 168 193
Thhalv10028723m C2H2 ZF 231 256

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.002G214700 Gossypium raimondii Gorai.002G214700 N
orange1.1g026846m.g Citrus sinensis orange1.1g026846m.g N