Gorai.002G214700 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.002G214700 T142997_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G214700.1 C2H2 ZF 77 101
Gorai.002G214700.1 C2H2 ZF 106 130
Gorai.002G214700.1 C2H2 ZF 136 160
Gorai.002G214700.1 C2H2 ZF 166 191
Gorai.002G214700.1 C2H2 ZF 229 254
Gorai.002G214700.2 C2H2 ZF 77 101
Gorai.002G214700.2 C2H2 ZF 106 130
Gorai.002G214700.2 C2H2 ZF 136 160
Gorai.002G214700.2 C2H2 ZF 166 191
Gorai.002G214700.2 C2H2 ZF 229 254
Gorai.002G214700.3 C2H2 ZF 77 101
Gorai.002G214700.3 C2H2 ZF 106 130
Gorai.002G214700.3 C2H2 ZF 136 160
Gorai.002G214700.3 C2H2 ZF 166 191
Gorai.002G214700.3 C2H2 ZF 229 254
Gorai.002G214700.4 C2H2 ZF 77 101
Gorai.002G214700.4 C2H2 ZF 106 130
Gorai.002G214700.4 C2H2 ZF 136 160
Gorai.002G214700.4 C2H2 ZF 166 191
Gorai.002G214700.4 C2H2 ZF 229 254
Gorai.002G214700.5 C2H2 ZF 31 55
Gorai.002G214700.5 C2H2 ZF 60 84
Gorai.002G214700.5 C2H2 ZF 90 114
Gorai.002G214700.5 C2H2 ZF 120 145
Gorai.002G214700.5 C2H2 ZF 183 208
Gorai.002G214700.6 C2H2 ZF 77 101
Gorai.002G214700.6 C2H2 ZF 106 130
Gorai.002G214700.6 C2H2 ZF 136 160
Gorai.002G214700.6 C2H2 ZF 166 191
Gorai.002G214700.6 C2H2 ZF 229 254
Gorai.002G214700.7 C2H2 ZF 44 58
Gorai.002G214700.7 C2H2 ZF 64 89
Gorai.002G214700.7 C2H2 ZF 127 152
Gorai.002G214700.8 C2H2 ZF 10 35
Gorai.002G214700.8 C2H2 ZF 73 98

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g026846m.g Citrus sinensis orange1.1g026846m.g N 0.821
TCM_006252 Theobroma cacao TCM_006252 N 0.818
Eucgr.G00356 Eucalyptus grandis Eucgr.G00356 N 0.815
SapurV1A.0470s0060 Salix purpurea SapurV1A.0470s0060 N 0.815
SapurV1A.0618s0010 Salix purpurea SapurV1A.0618s0010 N 0.815
Ca_00041 Cicer arietinum Ca_00041 N 0.814
PRUPE_ppa007287mg Prunus persica PRUPE_ppa007287mg N 0.812
Pm003925 Prunus mume Pm003925 N 0.812
POPTR_0004s23050 Populus trichocarpa POPTR_0004s23050 N 0.811
Cucsa.076000 Cucumis sativus Cucsa.076000 N 0.808
GLYMA05G30150 Glycine max GLYMA05G30150 N 0.806
GLYMA08G13310 Glycine max GLYMA08G13310 N 0.806
POPTR_0022s00900 Populus trichocarpa POPTR_0022s00900 N 0.806
evm.TU.supercontig_161.1 Carica papaya evm.TU.supercontig_161.1 N 0.806
SapurV1A.0136s0510 Salix purpurea SapurV1A.0136s0510 N 0.806
VIT_12s0035g00660 Vitis vinifera VIT_12s0035g00660 N 0.804
LjT40J14.40.nc Lotus japonicus LjT40J14.40.nc N 0.804
30093.m000368 Ricinus communis 30093.m000368 N 0.803
PK13777.1 Cannabis sativa PK13777.1 N 0.803
cassava13878.valid.m1 Manihot esculenta cassava13878.valid.m1 N 0.796
MDP0000210323 Malus domestica MDP0000210323 N 0.787
mgf016294m Mimulus guttatus mgf016294m N 0.772