POPTR_0004s23050 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0004s23050 T126803_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s23050.1 C2H2 ZF 82 106
POPTR_0004s23050.1 C2H2 ZF 111 135
POPTR_0004s23050.1 C2H2 ZF 141 165
POPTR_0004s23050.1 C2H2 ZF 171 196
POPTR_0004s23050.1 C2H2 ZF 234 259

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0470s0060 Salix purpurea SapurV1A.0470s0060 N 0.823
SapurV1A.0618s0010 Salix purpurea SapurV1A.0618s0010 N 0.823
POPTR_0022s00900 Populus trichocarpa POPTR_0022s00900 N 0.814
SapurV1A.0136s0510 Salix purpurea SapurV1A.0136s0510 N 0.814
TCM_006252 Theobroma cacao TCM_006252 N 0.811
Gorai.002G214700 Gossypium raimondii Gorai.002G214700 N 0.811
VIT_12s0035g00660 Vitis vinifera VIT_12s0035g00660 N 0.802
PRUPE_ppa007287mg Prunus persica PRUPE_ppa007287mg N 0.800
Pm003925 Prunus mume Pm003925 N 0.800
Eucgr.G00356 Eucalyptus grandis Eucgr.G00356 N 0.799
Ca_00041 Cicer arietinum Ca_00041 N 0.798
30093.m000368 Ricinus communis 30093.m000368 N 0.796
Cucsa.076000 Cucumis sativus Cucsa.076000 N 0.796
evm.TU.supercontig_161.1 Carica papaya evm.TU.supercontig_161.1 N 0.794
PK13777.1 Cannabis sativa PK13777.1 N 0.791
GLYMA05G30150 Glycine max GLYMA05G30150 N 0.790
GLYMA08G13310 Glycine max GLYMA08G13310 N 0.790
LjT40J14.40.nc Lotus japonicus LjT40J14.40.nc N 0.788
cassava13878.valid.m1 Manihot esculenta cassava13878.valid.m1 N 0.784
mgf016294m Mimulus guttatus mgf016294m N 0.775