POPTR_0022s00900 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0022s00900 T126852_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0022s00900.1 C2H2 ZF 81 105
POPTR_0022s00900.1 C2H2 ZF 110 134
POPTR_0022s00900.1 C2H2 ZF 140 164
POPTR_0022s00900.1 C2H2 ZF 170 195
POPTR_0022s00900.1 C2H2 ZF 233 258

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0136s0510 Salix purpurea SapurV1A.0136s0510 N 0.827
SapurV1A.0618s0010 Salix purpurea SapurV1A.0618s0010 N 0.818
SapurV1A.0470s0060 Salix purpurea SapurV1A.0470s0060 N 0.818
POPTR_0004s23050 Populus trichocarpa POPTR_0004s23050 N 0.814
Eucgr.G00356 Eucalyptus grandis Eucgr.G00356 N 0.813
Ca_00041 Cicer arietinum Ca_00041 N 0.811
VIT_12s0035g00660 Vitis vinifera VIT_12s0035g00660 N 0.811
Cucsa.076000 Cucumis sativus Cucsa.076000 N 0.806
Gorai.002G214700 Gossypium raimondii Gorai.002G214700 N 0.806
30093.m000368 Ricinus communis 30093.m000368 N 0.806
TCM_006252 Theobroma cacao TCM_006252 N 0.806
GLYMA08G13310 Glycine max GLYMA08G13310 N 0.803
GLYMA05G30150 Glycine max GLYMA05G30150 N 0.803
evm.TU.supercontig_161.1 Carica papaya evm.TU.supercontig_161.1 N 0.803
LjT40J14.40.nc Lotus japonicus LjT40J14.40.nc N 0.802
PK13777.1 Cannabis sativa PK13777.1 N 0.801
Pm003925 Prunus mume Pm003925 N 0.800
PRUPE_ppa007287mg Prunus persica PRUPE_ppa007287mg N 0.800
cassava13878.valid.m1 Manihot esculenta cassava13878.valid.m1 N 0.798
mgf016294m Mimulus guttatus mgf016294m N 0.784