cassava13878.valid.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava13878.valid.m1 T137819_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava13878.valid.m1 C2H2 ZF 77 101
cassava13878.valid.m1 C2H2 ZF 106 130
cassava13878.valid.m1 C2H2 ZF 136 160
cassava13878.valid.m1 C2H2 ZF 166 191
cassava13878.valid.m1 C2H2 ZF 229 254

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30093.m000368 Ricinus communis 30093.m000368 N 0.811
Eucgr.G00356 Eucalyptus grandis Eucgr.G00356 N 0.803
Ca_00041 Cicer arietinum Ca_00041 N 0.801
POPTR_0022s00900 Populus trichocarpa POPTR_0022s00900 N 0.798
SapurV1A.0136s0510 Salix purpurea SapurV1A.0136s0510 N 0.798
Gorai.002G214700 Gossypium raimondii Gorai.002G214700 N 0.796
Cucsa.076000 Cucumis sativus Cucsa.076000 N 0.796
GLYMA08G13310 Glycine max GLYMA08G13310 N 0.793
GLYMA05G30150 Glycine max GLYMA05G30150 N 0.793
evm.TU.supercontig_161.1 Carica papaya evm.TU.supercontig_161.1 N 0.793
VIT_12s0035g00660 Vitis vinifera VIT_12s0035g00660 N 0.792
LjT40J14.40.nc Lotus japonicus LjT40J14.40.nc N 0.792
PK13777.1 Cannabis sativa PK13777.1 N 0.791
Pm003925 Prunus mume Pm003925 N 0.790
PRUPE_ppa007287mg Prunus persica PRUPE_ppa007287mg N 0.790
SapurV1A.0470s0060 Salix purpurea SapurV1A.0470s0060 N 0.788
SapurV1A.0618s0010 Salix purpurea SapurV1A.0618s0010 N 0.788
TCM_006252 Theobroma cacao TCM_006252 N 0.786
POPTR_0004s23050 Populus trichocarpa POPTR_0004s23050 N 0.784
mgf016294m Mimulus guttatus mgf016294m N 0.765