PK25720.1 (Cannabis sativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PK25720.1 T144918_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.806 0.932
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.806 0.932
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK25720.1 C2H2 ZF 197 218
PK25720.1 C2H2 ZF 217 244

Links

Other C2H2 ZF family TFs
Other Cannabis sativa TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29904.m002956 Ricinus communis 29904.m002956 N 0.000
29908.m006098 Ricinus communis 29908.m006098 N 0.000
30054.m000819 Ricinus communis 30054.m000819 N 0.000
30128.m008737 Ricinus communis 30128.m008737 N 0.000
AC233899.1_FG002 Zea mays AC233899.1_FG002 N 0.000
AMTR_s00089p00043950 Amborella trichopoda AMTR_s00089p00043950 N 0.000
Aquca_005_00478 Aquilegia coerulea Aquca_005_00478 N 0.000
Aquca_034_00130 Aquilegia coerulea Aquca_034_00130 N 0.000
AT1G22490 Arabidopsis thaliana AT1G22490 N 0.000
BHLH96 Arabidopsis thaliana AT1G72210 N 0.000
FAMA Arabidopsis thaliana AT3G24140 N 0.000
BGIOSGA005582 Oryza indica BGIOSGA005582 N 0.000
BGIOSGA030936 Oryza indica BGIOSGA030936 N 0.000
BGIOSGA032814 Oryza indica BGIOSGA032814 N 0.000
Bo1g101110 Brassica oleracea Bo1g101110 N 0.000
Bo2g075510 Brassica oleracea Bo2g075510 N 0.000
Bo3g082010 Brassica oleracea Bo3g082010 N 0.000
Bo5g038570 Brassica oleracea Bo5g038570 N 0.000
Bo6g092570 Brassica oleracea Bo6g092570 N 0.000
Bo6g114730 Brassica oleracea Bo6g114730 N 0.000
Bo7g037540 Brassica oleracea Bo7g037540 N 0.000
Bo7g057920 Brassica oleracea Bo7g057920 N 0.000
Bo8g071490 Brassica oleracea Bo8g071490 N 0.000
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N 0.000
Bostr.12659s0103 Boechera stricta Bostr.12659s0103 N 0.000
Bostr.19424s0222 Boechera stricta Bostr.19424s0222 N 0.000
Bra001929 Brassica rapa Bra001929 N 0.000
Bra003886 Brassica rapa Bra003886 N 0.000
Bra008017 Brassica rapa Bra008017 N 0.000
Bra012329 Brassica rapa Bra012329 N 0.000
Bra016080 Brassica rapa Bra016080 N 0.000
Bra016377 Brassica rapa Bra016377 N 0.000
Bra028357 Brassica rapa Bra028357 N 0.000
Bra040856 Brassica rapa Bra040856 N 0.000
Cagra.0026s0026 Capsella grandiflora Cagra.0026s0026 N 0.000
Cagra.0114s0053 Capsella grandiflora Cagra.0114s0053 N 0.000
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N 0.000
Carubv10011476m.g Capsella rubella Carubv10011476m.g N 0.000
Carubv10013821m.g Capsella rubella Carubv10013821m.g N 0.000
Carubv10020657m.g Capsella rubella Carubv10020657m.g N 0.000
cassava13431.valid.m1 Manihot esculenta cassava13431.valid.m1 N 0.000
cassava19507.valid.m1 Manihot esculenta cassava19507.valid.m1 N 0.000
cassava22781.valid.m1 Manihot esculenta cassava22781.valid.m1 N 0.000
cassava27750.m1 Manihot esculenta cassava27750.m1 N 0.000
cassava27856.m1 Manihot esculenta cassava27856.m1 N 0.000
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N 0.000
cassava34492.m1 Manihot esculenta cassava34492.m1 N 0.000
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N 0.000
Ca_01181 Cicer arietinum Ca_01181 N 0.000
Ca_12363 Cicer arietinum Ca_12363 N 0.000
Ca_16010 Cicer arietinum Ca_16010 N 0.000
Ca_28086 Cicer arietinum Ca_28086 N 0.000
chr1.CM0544.580.nd Lotus japonicus chr1.CM0544.580.nd N 0.000
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N 0.000
chr1.LjT40H13.220.nd Lotus japonicus chr1.LjT40H13.220.nd N 0.000
chr5.CM0211.190.nc Lotus japonicus chr5.CM0211.190.nc N 0.000
chr6.CM0738.340.nd Lotus japonicus chr6.CM0738.340.nd N 0.000
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N 0.000
Ciclev10005031m.g Citrus clementina Ciclev10005031m.g N 0.000
Ciclev10026131m.g Citrus clementina Ciclev10026131m.g N 0.000
Cla005338 Citrullus lanatus Cla005338 N 0.000
Cla020173 Citrullus lanatus Cla020173 N 0.000
Cla021744 Citrullus lanatus Cla021744 N 0.000
Cla022458 Citrullus lanatus Cla022458 N 0.000
Cucsa.091670 Cucumis sativus Cucsa.091670 N 0.000
Cucsa.160250 Cucumis sativus Cucsa.160250 N 0.000
Cucsa.163550 Cucumis sativus Cucsa.163550 N 0.000
Cucsa.256420 Cucumis sativus Cucsa.256420 N 0.000
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N 0.000
Eucgr.E00273 Eucalyptus grandis Eucgr.E00273 N 0.000
Eucgr.H04468 Eucalyptus grandis Eucgr.H04468 N 0.000
Eucgr.H04738 Eucalyptus grandis Eucgr.H04738 N 0.000
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N 0.000
evm.TU.supercontig_48.15 Carica papaya evm.TU.supercontig_48.15 N 0.000
evm.TU.supercontig_59.132 Carica papaya evm.TU.supercontig_59.132 N 0.000
fgenesh1_pg.C_scaffold_1002057 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002057 N 0.000
fgenesh1_pm.C_scaffold_6002861 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002861 N 0.000
gene02199-v1.0-hybrid Fragaria vesca gene02199-v1.0-hybrid N 0.000
gene12030-v1.0-hybrid Fragaria vesca gene12030-v1.0-hybrid N 0.000
gene22289-v1.0-hybrid Fragaria vesca gene22289-v1.0-hybrid N 0.000
GLYMA01G23230 Glycine max GLYMA01G23230 N 0.000
GLYMA02G14290 Glycine max GLYMA02G14290 N 0.000
GLYMA02G37313 Glycine max GLYMA02G37313 N 0.000
GLYMA03G39990 Glycine max GLYMA03G39990 N 0.000
GLYMA04G10630 Glycine max GLYMA04G10630 N 0.000
GLYMA06G10470 Glycine max GLYMA06G10470 N 0.000
GLYMA06G35330 Glycine max GLYMA06G35330 N 0.000
GLYMA08G36590 Glycine max GLYMA08G36590 N 0.000
GLYMA14G35560 Glycine max GLYMA14G35560 N 0.000
GLYMA19G42520 Glycine max GLYMA19G42520 N 0.000
GLYMA20G37550 Glycine max GLYMA20G37550 N 0.000
Gorai.005G094800 Gossypium raimondii Gorai.005G094800 N 0.000
Gorai.006G217200 Gossypium raimondii Gorai.006G217200 N 0.000
Gorai.008G225800 Gossypium raimondii Gorai.008G225800 N 0.000
Gorai.009G233000 Gossypium raimondii Gorai.009G233000 N 0.000
Gorai.011G159100 Gossypium raimondii Gorai.011G159100 N 0.000
Gorai.013G204300 Gossypium raimondii Gorai.013G204300 N 0.000
GRMZM2G008691 Zea mays GRMZM2G008691 N 0.000
GRMZM2G015666 Zea mays GRMZM2G015666 N 0.000
GRMZM2G045883 Zea mays GRMZM2G045883 N 0.000
GRMZM2G082586 Zea mays GRMZM2G082586 N 0.000
GSMUA_Achr10G30300_001 Musa acuminata GSMUA_Achr10G30300_001 N 0.000
GSMUA_Achr7G12790_001 Musa acuminata GSMUA_Achr7G12790_001 N 0.000
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N 0.000
LPERR08G15350 Leersia perrieri LPERR08G15350 N 0.000
LPERR09G09700 Leersia perrieri LPERR09G09700 N 0.000
Lus10000332.g Linum usitatissimum Lus10000332.g N 0.000
Lus10001271.g Linum usitatissimum Lus10001271.g N 0.000
Lus10009475.g Linum usitatissimum Lus10009475.g N 0.000
Lus10010101.g Linum usitatissimum Lus10010101.g N 0.000
Lus10012603.g Linum usitatissimum Lus10012603.g N 0.000
Lus10015902.g Linum usitatissimum Lus10015902.g N 0.000
Lus10016680.g Linum usitatissimum Lus10016680.g N 0.000
Lus10029950.g Linum usitatissimum Lus10029950.g N 0.000
MDP0000267178 Malus domestica MDP0000267178 N 0.000
MDP0000646823 Malus domestica MDP0000646823 N 0.000
MDP0000672131 Malus domestica MDP0000672131 N 0.000
MDP0000944210 Malus domestica MDP0000944210 N 0.000
mgf015694m Mimulus guttatus mgf015694m N 0.000
MLOC_21759 Hordeum vulgare MLOC_21759 N 0.000
MTR_0194s0050 Medicago truncatula MTR_0194s0050 N 0.000
MTR_3g099620 Medicago truncatula MTR_3g099620 N 0.000
MTR_5g064950 Medicago truncatula MTR_5g064950 N 0.000
MTR_7g113830 Medicago truncatula MTR_7g113830 N 0.000
MTR_8g066770 Medicago truncatula MTR_8g066770 N 0.000
OB02G40170 Oryza brachyantha OB02G40170 N 0.000
OB03G16590 Oryza brachyantha OB03G16590 N 0.000
OB09G19960 Oryza brachyantha OB09G19960 N 0.000
OB10G16200 Oryza brachyantha OB10G16200 N 0.000
OBART02G33270 Oryza barthii OBART02G33270 N 0.000
OBART10G08120 Oryza barthii OBART10G08120 N 0.000
OGLUM02G33770 Oryza glumaepatula OGLUM02G33770 N 0.000
OGLUM10G07850 Oryza glumaepatula OGLUM10G07850 N 0.000
OMERI02G31750 Oryza meridionalis OMERI02G31750 N 0.000
OMERI09G10430 Oryza meridionalis OMERI09G10430 N 0.000
ONIVA02G35790 Oryza nivara ONIVA02G35790 N 0.000
ONIVA09G13890 Oryza nivara ONIVA09G13890 N 0.000
ONIVA10G07810 Oryza nivara ONIVA10G07810 N 0.000
OPUNC02G30580 Oryza punctata OPUNC02G30580 N 0.000
OPUNC03G06240 Oryza punctata OPUNC03G06240 N 0.000
OPUNC09G11790 Oryza punctata OPUNC09G11790 N 0.000
OPUNC10G07050 Oryza punctata OPUNC10G07050 N 0.000
orange1.1g014477m.g Citrus sinensis orange1.1g014477m.g N 0.000
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N 0.000
orange1.1g036531m.g Citrus sinensis orange1.1g036531m.g N 0.000
orange1.1g043618m.g Citrus sinensis orange1.1g043618m.g N 0.000
ORGLA02G0287300 Oryza glaberrima ORGLA02G0287300 N 0.000
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N 0.000
ORGLA10G0067600 Oryza glaberrima ORGLA10G0067600 N 0.000
ORUFI02G34810 Oryza rufipogon ORUFI02G34810 N 0.000
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N 0.000
ORUFI10G08570 Oryza rufipogon ORUFI10G08570 N 0.000
OS09G0468700 Oryza sativa OS09G0468700 N 0.000
OS10G0376900 Oryza sativa OS10G0376900 N 0.000
Pavir.Aa00538 Panicum virgatum Pavir.Aa00538 N 0.000
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N 0.000
Pavir.Db01842 Panicum virgatum Pavir.Db01842 N 0.000
Pavir.Fb01787 Panicum virgatum Pavir.Fb01787 N 0.000
Pavir.Ia02758 Panicum virgatum Pavir.Ia02758 N 0.000
Pavir.Ia03109 Panicum virgatum Pavir.Ia03109 N 0.000
Pavir.Ia04907 Panicum virgatum Pavir.Ia04907 N 0.000
Pavir.Ib02778 Panicum virgatum Pavir.Ib02778 N 0.000
Pavir.J22933 Panicum virgatum Pavir.J22933 N 0.000
Pavir.J40759 Panicum virgatum Pavir.J40759 N 0.000
PGSC0003DMG400002125 Solanum tuberosum PGSC0003DMG400002125 N 0.000
PGSC0003DMG400015760 Solanum tuberosum PGSC0003DMG400015760 N 0.000
PGSC0003DMG400017540 Solanum tuberosum PGSC0003DMG400017540 N 0.000
PGSC0003DMG400028578 Solanum tuberosum PGSC0003DMG400028578 N 0.000
PGSC0003DMG400029634 Solanum tuberosum PGSC0003DMG400029634 N 0.000
PK04856.1 Cannabis sativa PK04856.1 N 0.000
PK14736.1 Cannabis sativa PK14736.1 N 0.000
PK21294.1 Cannabis sativa PK21294.1 N 0.000
PK28391.1 Cannabis sativa PK28391.1 N 0.000
Pm003380 Prunus mume Pm003380 N 0.000
Pm004489 Prunus mume Pm004489 N 0.000
Pm009474 Prunus mume Pm009474 N 0.000
Pm023207 Prunus mume Pm023207 N 0.000
POPTR_0001s32160 Populus trichocarpa POPTR_0001s32160 N 0.000
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N 0.000
POPTR_0005s04160 Populus trichocarpa POPTR_0005s04160 N 0.000
POPTR_0005s07210 Populus trichocarpa POPTR_0005s07210 N 0.000
POPTR_0007s04950 Populus trichocarpa POPTR_0007s04950 N 0.000
POPTR_0013s02680 Populus trichocarpa POPTR_0013s02680 N 0.000
POPTR_0017s08160 Populus trichocarpa POPTR_0017s08160 N 0.000
PRUPE_ppa009461mg Prunus persica PRUPE_ppa009461mg N 0.000
PRUPE_ppa011095mg Prunus persica PRUPE_ppa011095mg N 0.000
PRUPE_ppa017746mg Prunus persica PRUPE_ppa017746mg N 0.000
PRUPE_ppa020429mg Prunus persica PRUPE_ppa020429mg N 0.000
SapurV1A.0039s0400 Salix purpurea SapurV1A.0039s0400 N 0.000
SapurV1A.0092s0130 Salix purpurea SapurV1A.0092s0130 N 0.000
SapurV1A.0311s0110 Salix purpurea SapurV1A.0311s0110 N 0.000
SapurV1A.0462s0070 Salix purpurea SapurV1A.0462s0070 N 0.000
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N 0.000
SapurV1A.1055s0160 Salix purpurea SapurV1A.1055s0160 N 0.000
SapurV1A.1124s0170 Salix purpurea SapurV1A.1124s0170 N 0.000
SapurV1A.3502s0020 Salix purpurea SapurV1A.3502s0020 N 0.000
Sb0012s004780 Sorghum bicolor Sb0012s004780 N 0.000
Sb01g044640 Sorghum bicolor Sb01g044640 N 0.000
Sb02g027210 Sorghum bicolor Sb02g027210 N 0.000
Sb04g027280 Sorghum bicolor Sb04g027280 N 0.000
FMA Arabidopsis lyrata scaffold_302925.1 N 0.000
SELMODRAFT_428659 Selaginella moellendorffii SELMODRAFT_428659 N 0.000
SELMODRAFT_430716 Selaginella moellendorffii SELMODRAFT_430716 N 0.000
Si013925m.g Setaria italica Si013925m.g N 0.000
Si017701m.g Setaria italica Si017701m.g N 0.000
Si036568m.g Setaria italica Si036568m.g N 0.000
Si038653m.g Setaria italica Si038653m.g N 0.000
Solyc05g053660.1 Solanum lycopersicum Solyc05g053660.1 N 0.000
Solyc08g076820.2 Solanum lycopersicum Solyc08g076820.2 N 0.000
Solyc09g091760.1 Solanum lycopersicum Solyc09g091760.1 N 0.000
TCM_015694 Theobroma cacao TCM_015694 N 0.000
TCM_020336 Theobroma cacao TCM_020336 N 0.000
TCM_026599 Theobroma cacao TCM_026599 N 0.000
TCM_034439 Theobroma cacao TCM_034439 N 0.000
Thhalv10002558m.g Eutrema salsugineum Thhalv10002558m.g N 0.000
Thhalv10009836m.g Eutrema salsugineum Thhalv10009836m.g N 0.000
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N 0.000
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N 0.000
TRIUR3_09788 Triticum urartu TRIUR3_09788 N 0.000
FMA Vitis vinifera VIT_05s0029g00050 N 0.000
VIT_14s0128g00110 Vitis vinifera VIT_14s0128g00110 N 0.000
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N 0.000