gli1 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-482644 T145422_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.778 0.939
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.778 0.939
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.778 0.939
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.778 0.939
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.778 0.939
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.778 0.939
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.761 0.922
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.761 0.922
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.761 0.922
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.761 0.922
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.761 0.922
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.761 0.922
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.761 0.922
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.761 0.922
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.761 0.922
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002939471 C2H2 ZF 250 275
XP_002939471 C2H2 ZF 283 310
XP_002939471 C2H2 ZF 316 340
XP_002939471 C2H2 ZF 346 371
XP_002939471 C2H2 ZF 377 402

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1YGC6_PANPA Pan paniscus A1YGC6_PANPA D
HR83 Aedes aegypti AAEL007350 I
AALB009657 Anopheles albimanus AALB009657 I
Aan_R007044 Calypte anna Aan_R007044 I
AARA006703 Anopheles arabiensis AARA006703 I
ACAC_0001082701 Angiostrongylus cantonensis ACAC_0001082701 I
ACOC_0001282001 Angiostrongylus costaricensis ACOC_0001282001 I
ACYPI48102 Acyrthosiphon pisum ACYPI48102 I
AEPI004731 Anopheles epiroticus AEPI004731 I
AFUN005541 Anopheles funestus AFUN005541 I
AGAP002234 Anopheles gambiae AGAP002234 I
Alligator_sinensis_CCG021621.1 Alligator sinensis Alligator_sinensis_CCG021621.1 I
AMAM005986 Anopheles maculatus AMAM005986 I
AMEC011506 Anopheles melas AMEC011506 I
AMEM012481 Anopheles merus AMEM012481 I
AMIN000835 Anopheles minimus AMIN000835 I
AQUA004261 Anopheles quadriannulatus AQUA004261 I
ASTEI03427 Anopheles stephensi ASTEI03427 I
BXY_0039800 Bursaphelenchus xylophilus BXY_0039800 I
CapteG177303 Capitella teleta CapteG177303 I
CBG09846 Caenorhabditis briggsae CBG09846 I
CBN10661 Caenorhabditis brenneri CBN10661 I
Cmyd_10021619 Chelonia mydas Cmyd_10021619 I
CPIJ015933 Culex quinquefasciatus CPIJ015933 I
CpipJ_CPIJ015933 Culex pipiens CpipJ_CPIJ015933 I
CRE25188 Caenorhabditis remanei CRE25188 I
NR2E1 Anolis carolinensis ENSACAG00000005957 I
ENSAMEG00000008117 Ailuropoda melanoleuca ENSAMEG00000008117 I
ENSAPLG00000010675 Anas platyrhynchos ENSAPLG00000010675 I
NR2E1 Bos taurus ENSBTAG00000013991 I
ENSBTAP00000018594-D1 Bos grunniens ENSBTAP00000018594-D1 I
NR2E1 Canis familiaris ENSCAFG00000003761 I
NR2E1 Choloepus hoffmanni ENSCHOG00000007344 I
NR2E1 Callithrix jacchus ENSCJAG00000005966 I
NR2E1 Cavia porcellus ENSCPOG00000000097 I
ENSCSAG00000015143 Chlorocebus sabaeus ENSCSAG00000015143 I
nr2e1 Danio rerio ENSDARG00000017107 I
NR2E1 Dasypus novemcinctus ENSDNOG00000015478 I
NR2E1 Equus caballus ENSECAG00000018990 I
NR2E1 Erinaceus europaeus ENSEEUG00000015193 I
ENSFALG00000011755 Ficedula albicollis ENSFALG00000011755 I
NR2E1 Felis catus ENSFCAG00000002255 I
NR2E1 Homo sapiens ENSG00000112333 D
nr2e1 Gasterosteus aculeatus ENSGACG00000008934 I
NR2E1 Gallus gallus ENSGALG00000015305 I
ENSGGOG00000010051 Gorilla gorilla ENSGGOG00000010051 I
ENSGGOG00000027453 Gorilla gorilla ENSGGOG00000027453 I
ENSGMOG00000016036 Gadus morhua ENSGMOG00000016036 I
ENSLACG00000015675 Latimeria chalumnae ENSLACG00000015675 I
NR2E1 Loxodonta africana ENSLAFG00000013583 I
ENSLOCG00000016602 Lepisosteus oculatus ENSLOCG00000016602 I
NR2E1 Myotis lucifugus ENSMLUG00000005543 I
NR2E1 Macaca mulatta ENSMMUG00000023767 I
NR2E1 Monodelphis domestica ENSMODG00000018005 I
ENSMPUG00000009805 Mustela putorius furo ENSMPUG00000009805 I
Nr2e1 Mus musculus ENSMUSG00000019803 D
ENSNLEG00000013646 Nomascus leucogenys ENSNLEG00000013646 I
ENSOARG00000010848 Ovis aries ENSOARG00000010848 I
NR2E1 Oryctolagus cuniculus ENSOCUG00000005853 I
NR2E1 Otolemur garnettii ENSOGAG00000011992 I
ENSONIG00000013281 Oreochromis niloticus ENSONIG00000013281 I
nr2e1 Oryzias latipes ENSORLG00000013426 I
ENSP00000357979 Macaca fascicularis ENSP00000357979 I
ENSPANG00000016092 Papio anubis ENSPANG00000016092 I
ENSPFOG00000019532 Poecilia formosa ENSPFOG00000019532 I
ENSPPYG00000016893 Pongo abelii ENSPPYG00000016893 I
ENSPSIG00000006035 Pelodiscus sinensis ENSPSIG00000006035 I
NR2E1 Pan troglodytes ENSPTRG00000018472 I
NR2E1 Pteropus vampyrus ENSPVAG00000001731 I
Nr2e1 Rattus norvegicus ENSRNOG00000050550 I
NR2E1 Sorex araneus ENSSARG00000013555 I
ENSSHAG00000017854 Sarcophilus harrisii ENSSHAG00000017854 I
NR2E1 Sus scrofa ENSSSCG00000004384 I
ENSSTOG00000007248 Ictidomys tridecemlineatus ENSSTOG00000007248 I
NR2E1 Tupaia belangeri ENSTBEG00000011676 I
NR2E1 Taeniopygia guttata ENSTGUG00000012147 I
nr2e1 Tetraodon nigroviridis ENSTNIG00000012282 I
nr2e1 Takifugu rubripes ENSTRUG00000001893 I
NR2E1 Tursiops truncatus ENSTTRG00000008863 I
ENSXMAG00000003283 Xiphophorus maculatus ENSXMAG00000003283 I
e_gw.356.102.1 Branchiostoma floridae e_gw.356.102.1 I
Hr83 Drosophila melanogaster FBgn0037436 D
GA10225 Drosophila pseudoobscura FBgn0070284 I
GF16659 Drosophila ananassae FBgn0093680 I
GG13368 Drosophila erecta FBgn0105640 I
GH18089 Drosophila grimshawi FBgn0125557 I
GI24589 Drosophila mojavensis FBgn0147311 I
GL22067 Drosophila persimilis FBgn0159659 I
GM10889 Drosophila sechellia FBgn0165835 I
GD19868 Drosophila simulans FBgn0191357 I
GJ22654 Drosophila virilis FBgn0209758 I
GK13826 Drosophila willistoni FBgn0215834 I
GE10213 Drosophila yakuba FBgn0228087 I
Gfo_R016106 Geospiza fortis Gfo_R016106 I
gw.353.21.1 Branchiostoma floridae gw.353.21.1 I
HelroG148423 Helobdella robusta HelroG148423 I
HPLM_0002159101 Haemonchus placei HPLM_0002159101 I
Hsal_03084--XP_001121181.1_APIME Harpegnathos saltator Hsal_03084--XP_001121181.1_APIME I
ISCW008659 Ixodes scapularis ISCW008659 I
L596_g19535 Steinernema carpocapsae L596_g19535 N
L798_08383 Zootermopsis nevadensis L798_08383 I
L889_g32531 Steinernema feltiae L889_g32531 I
L892_g29081 Steinernema scapterisci L892_g29081 N
LCUP007875 Lucilia cuprina LCUP007875 I
LLOJ000718 Lutzomyia longipalpis LLOJ000718 I
LLOJ001302 Lutzomyia longipalpis LLOJ001302 I
LotgiG132791 Lottia gigantea LotgiG132791 I
MDOA009347 Musca domestica MDOA009347 I
NEMVEDRAFT_v1g114090 Nematostella vectensis NEMVEDRAFT_v1g114090 I
NV10871 Nasonia vitripennis NV10871 I
Ocbimv22005486m.g Octopus bimaculoides Ocbimv22005486m.g I
Ogr18563 Ophisaurus gracilis Ogr18563 I
PPAI010314 Phlebotomus papatasi PPAI010314 I
Pvit_18941 Pogona vitticeps Pvit_18941 I
Sakowv30002570m.g Saccoglossus kowalevskii Sakowv30002570m.g I
SMAR006023 Strigamia maritima SMAR006023 I
SMU15015045 Schmidtea mediterranea SMU15015045 I
SPU_008936 Strongylocentrotus purpuratus SPU_008936 I
SPU_012586 Strongylocentrotus purpuratus SPU_012586 I
SPU_027487 Strongylocentrotus purpuratus SPU_027487 I
SSLN_0001329801 Schistocephalus solidus SSLN_0001329801 I
TC010460 Tribolium castaneum TC010460 I
tetur01g07700 Tetranychus urticae tetur01g07700 I
nhr-239 Caenorhabditis elegans WBGene00021848 I
nr2e1 Xenopus tropicalis XB-GENE-483554 I
nr2e1.S Xenopus laevis XB-GENE-864991 I
XP_002156561.1 Hydra magnipapillata XP_002156561.1 I