11483_YJL056C (Saccharomyces paradoxus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 11483_YJL056C T145913_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAP1
M08416_2.00 		Saccharomyces cerevisiae
ACCYTMARGGTBRTG
CAYVACCYTKARGGT		 ChIP-chip
Mathelier et al.(2014)
MA0440.1 		0.772 0.934
ZAP1
M08531_2.00 		Saccharomyces cerevisiae
ACCCTMAAGGT
ACCTTKAGGGT		 Misc
DeBoer et al.(2011)
YJL056C_469 		0.772 0.934
ZAP1
M10396_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ZAP1_01 		0.772 0.934
ZAP1
M10397_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ZAP1_Q6_01 		0.772 0.934
ZAP1
M10398_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ZAP1_Q6 		0.772 0.934
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
11483_YJL056C C2H2 ZF 708 733
11483_YJL056C C2H2 ZF 741 765
11483_YJL056C C2H2 ZF 771 793
11483_YJL056C C2H2 ZF 799 821
11483_YJL056C C2H2 ZF 827 849
11483_YJL056C C2H2 ZF 853 874

Links

Other C2H2 ZF family TFs
Other Saccharomyces paradoxus TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA022089 Oryza indica BGIOSGA022089 N
BGIOSGA022090 Oryza indica BGIOSGA022090 N
BGIOSGA028020 Oryza indica BGIOSGA028020 N
BGIOSGA031489 Oryza indica BGIOSGA031489 N
BRADI1G52000 Brachypodium distachyon BRADI1G52000 N
GRMZM2G018485 Zea mays GRMZM2G018485 N
GRMZM2G027253 Zea mays GRMZM2G027253 N
GRMZM2G082227 Zea mays GRMZM2G082227 N
GRMZM2G102059 Zea mays GRMZM2G102059 N
LPERR06G00460 Leersia perrieri LPERR06G00460 N
LPERR10G12990 Leersia perrieri LPERR10G12990 N
MLOC_19134 Hordeum vulgare MLOC_19134 N
OB06G10550 Oryza brachyantha OB06G10550 N
OBART03G25130 Oryza barthii OBART03G25130 N
OBART10G17010 Oryza barthii OBART10G17010 N
OGLUM06G00440 Oryza glumaepatula OGLUM06G00440 N
OGLUM08G03520 Oryza glumaepatula OGLUM08G03520 N
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N
OMERI06G00450 Oryza meridionalis OMERI06G00450 N
OMERI10G13480 Oryza meridionalis OMERI10G13480 N
ONIVA06G00500 Oryza nivara ONIVA06G00500 N
ONIVA08G03420 Oryza nivara ONIVA08G03420 N
ONIVA10G18740 Oryza nivara ONIVA10G18740 N
OPUNC06G00440 Oryza punctata OPUNC06G00440 N
OPUNC08G03290 Oryza punctata OPUNC08G03290 N
OPUNC10G16940 Oryza punctata OPUNC10G16940 N
ORGLA06G0005000 Oryza glaberrima ORGLA06G0005000 N
ORGLA08G0028800 Oryza glaberrima ORGLA08G0028800 N
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N
ORUFI06G00530 Oryza rufipogon ORUFI06G00530 N
ORUFI08G03850 Oryza rufipogon ORUFI08G03850 N
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N
OS08G0157700 Oryza sativa OS08G0157700 N
OS10G0537100 Oryza sativa OS10G0537100 N
Pavir.Da02442 Panicum virgatum Pavir.Da02442 N
Pavir.Db02478 Panicum virgatum Pavir.Db02478 N
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N
Pavir.J06582 Panicum virgatum Pavir.J06582 N
Pavir.J35382 Panicum virgatum Pavir.J35382 N
Pavir.J38226 Panicum virgatum Pavir.J38226 N
Sb01g049150 Sorghum bicolor Sb01g049150 N
Sb06g026370 Sorghum bicolor Sb06g026370 N
Sb10g000780 Sorghum bicolor Sb10g000780 N
Si008509m.g Setaria italica Si008509m.g N
Si011823m.g Setaria italica Si011823m.g N
Si036864m.g Setaria italica Si036864m.g N
Si039972m.g Setaria italica Si039972m.g N