Pavir.J35382 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.J35382 T023997_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J35382.1.p B3 32 144

Links

Other B3 family TFs
Other Panicum virgatum TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.980
Si039972m.g Setaria italica Si039972m.g N 0.941
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.911
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.901
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.881
OBART10G17010 Oryza barthii OBART10G17010 N 0.881
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.881
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.881
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.881
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.881
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.881
OS10G0537100 Oryza sativa OS10G0537100 N 0.881
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.871
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.871
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.871
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.871
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.871
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.832
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.822
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.822
OBART03G01650 Oryza barthii OBART03G01650 N 0.822
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.822
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.822
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.822
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.822
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.822
OS03G0120900 Oryza sativa OS03G0120900 N 0.822
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.822
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.822
Si011823m.g Setaria italica Si011823m.g N 0.822
Si036864m.g Setaria italica Si036864m.g N 0.822
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.822
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.822
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.822
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.812
OB03G11610 Oryza brachyantha OB03G11610 N 0.812
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.812
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.812
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.812
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.802
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.802
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.802
OBART02G28100 Oryza barthii OBART02G28100 N 0.802
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.802
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.802
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.802
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.802
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.802
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.802
OS02G0683500 Oryza sativa OS02G0683500 N 0.802
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.802
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.792
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.792
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.792
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.792
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.792
OB02G35380 Oryza brachyantha OB02G35380 I 0.792
OBART04G22880 Oryza barthii OBART04G22880 I 0.792
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.792
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.792
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.792
OS04G0581400 Oryza sativa OS04G0581400 I 0.792
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.792
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.792
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.792
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.782
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.782
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.782
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.782
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.772
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.772
Si020241m.g Setaria italica Si020241m.g N 0.772
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.772
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.772
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.762
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.762
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.762
PK21157.1 Cannabis sativa PK21157.1 I 0.762
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.762
Bo3g039420 Brassica oleracea Bo3g039420 N 0.752
Bra000434 Brassica rapa Bra000434 N 0.752
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.752
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.752
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.752
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.752
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.752
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.752
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.752
TCM_005014 Theobroma cacao TCM_005014 I 0.752
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.752
Cla006845 Citrullus lanatus Cla006845 I 0.752
Pm024248 Prunus mume Pm024248 I 0.752
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.752
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.752
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.752
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.752
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.752
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.752
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.752
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.752
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.752
PK11025.1 Cannabis sativa PK11025.1 I 0.752
Bo6g079210 Brassica oleracea Bo6g079210 N 0.743
Bra003482 Brassica rapa Bra003482 N 0.743
Bra004501 Brassica rapa Bra004501 N 0.743
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.743
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.743
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.743
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.743
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.743
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.743
TCM_015590 Theobroma cacao TCM_015590 I 0.743
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.743
Ca_01368 Cicer arietinum Ca_01368 I 0.743
Pm028725 Prunus mume Pm028725 N 0.743
30068.m002615 Ricinus communis 30068.m002615 I 0.743
30076.m004471 Ricinus communis 30076.m004471 I 0.743
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.743
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.743
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.743
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.743
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.743
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.743
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.743
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.743
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.743
NGA1 Arabidopsis thaliana AT2G46870 N 0.733
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.733
Bo4g006900 Brassica oleracea Bo4g006900 N 0.733
Bo4g197410 Brassica oleracea Bo4g197410 I 0.733
Bra040478 Brassica rapa Bra040478 I 0.733
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.733
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.733
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.733
OBART11G03590 Oryza barthii OBART11G03590 N 0.733
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.733
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.733
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.733
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.733
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.733
OS11G0156000 Oryza sativa OS11G0156000 N 0.733
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.733
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.733
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.733
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.733
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.733
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.733
Cla014858 Citrullus lanatus Cla014858 N 0.733
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.733
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.733
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.733
mgf023769m Mimulus guttatus mgf023769m N 0.733
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.733
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.733
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.733
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.733
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.733
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.723
ARF31 Arabidopsis thaliana AT2G36080 N 0.723
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.723
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.723
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.723
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.723
OB11G12920 Oryza brachyantha OB11G12920 N 0.723
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.723
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.723
OPUNC06G00440 Oryza punctata OPUNC06G00440 N 0.723
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.723
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.723
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.723
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.723
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.723
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.723
Cla005055 Citrullus lanatus Cla005055 N 0.723
Cla017937 Citrullus lanatus Cla017937 I 0.723
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.723
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.723
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.723
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.723
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.723
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.723
MDP0000229742 Malus domestica MDP0000229742 N 0.723
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.723
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.723
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.723
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.723
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.723
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.723
PK04952.1 Cannabis sativa PK04952.1 I 0.723
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.722
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.717
NGA3 Arabidopsis thaliana AT1G01030 N 0.713
NGA2 Arabidopsis thaliana AT3G61970 N 0.713
Bo01079s020 Brassica oleracea Bo01079s020 N 0.713
Bo4g035110 Brassica oleracea Bo4g035110 N 0.713
Bo5g002790 Brassica oleracea Bo5g002790 N 0.713
Bo8g097490 Brassica oleracea Bo8g097490 N 0.713
Bra005301 Brassica rapa Bra005301 N 0.713
Bra007646 Brassica rapa Bra007646 N 0.713
Bra014415 Brassica rapa Bra014415 N 0.713
Bra017262 Brassica rapa Bra017262 N 0.713
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.713
GRMZM2G027253 Zea mays GRMZM2G027253 N 0.713
LPERR07G08550 Leersia perrieri LPERR07G08550 N 0.713
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.713
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.713
OB05G32250 Oryza brachyantha OB05G32250 I 0.713
OB12G13420 Oryza brachyantha OB12G13420 N 0.713
OPUNC07G09160 Oryza punctata OPUNC07G09160 N 0.713
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.713
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.713
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.713
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.713
Si027632m.g Setaria italica Si027632m.g N 0.713
Traes_4AL_445A910EB Triticum aestivum Traes_4AL_445A910EB N 0.713
Ca_00826 Cicer arietinum Ca_00826 N 0.713
Ca_25633 Cicer arietinum Ca_25633 I 0.713
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.713
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.713
mgf018965m Mimulus guttatus mgf018965m N 0.713
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.713
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.713
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.713
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.713
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.713
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.713
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.713
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.713
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.713
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.713
MDP0000138163 Malus domestica MDP0000138163 N 0.713
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.713
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.713
Bo3g001110 Brassica oleracea Bo3g001110 N 0.703
Bo4g099000 Brassica oleracea Bo4g099000 N 0.703
Bo9g176470 Brassica oleracea Bo9g176470 N 0.703
Bra030497 Brassica rapa Bra030497 N 0.703
Bra034828 Brassica rapa Bra034828 N 0.703
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.703
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.703
LPERR06G00460 Leersia perrieri LPERR06G00460 N 0.703
MLOC_47091 Hordeum vulgare MLOC_47091 N 0.703
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.703
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.703
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.703
TCM_022729 Theobroma cacao TCM_022729 N 0.703
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.703
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.703
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.703
30032.m000462 Ricinus communis 30032.m000462 N 0.703
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.703
mgf019085m Mimulus guttatus mgf019085m N 0.703
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.703
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.703
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.703
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.703
MDP0000288808 Malus domestica MDP0000288808 N 0.703
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.703
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.703