Cagra.0483s0046 (Capsella grandiflora)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Cagra.0483s0046 T022724_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0483s0046.1.p B3 25 131

Links

Other B3 family TFs
Other Capsella grandiflora TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.990
NGA2 Arabidopsis thaliana AT3G61970 N 0.980
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.980
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.980
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.951
Bra003482 Brassica rapa Bra003482 N 0.921
Bo8g097490 Brassica oleracea Bo8g097490 N 0.911
Bra007646 Brassica rapa Bra007646 N 0.911
Bo6g079210 Brassica oleracea Bo6g079210 N 0.911
Bra014415 Brassica rapa Bra014415 N 0.881
Bo4g099000 Brassica oleracea Bo4g099000 N 0.871
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.861
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.861
30068.m002615 Ricinus communis 30068.m002615 I 0.861
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.861
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.861
TCM_005014 Theobroma cacao TCM_005014 I 0.851
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.851
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.851
TCM_015590 Theobroma cacao TCM_015590 I 0.851
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.851
Pm028725 Prunus mume Pm028725 N 0.851
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.851
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.851
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.851
PK21157.1 Cannabis sativa PK21157.1 I 0.851
30076.m004471 Ricinus communis 30076.m004471 I 0.842
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.842
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.842
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.842
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.842
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.842
Pm024248 Prunus mume Pm024248 I 0.842
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.842
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.842
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.842
Bra040478 Brassica rapa Bra040478 I 0.842
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.832
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.832
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.832
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.832
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.832
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.832
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.832
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.832
PK11025.1 Cannabis sativa PK11025.1 I 0.832
Bo4g197410 Brassica oleracea Bo4g197410 I 0.832
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.832
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.822
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.822
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.822
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.822
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.822
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.822
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.822
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.822
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.822
NGA1 Arabidopsis thaliana AT2G46870 N 0.822
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.822
Bra004501 Brassica rapa Bra004501 N 0.822
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.822
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.812
Bo4g006900 Brassica oleracea Bo4g006900 N 0.812
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.812
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.812
Bo3g039420 Brassica oleracea Bo3g039420 N 0.812
mgf023769m Mimulus guttatus mgf023769m N 0.812
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.812
Bra000434 Brassica rapa Bra000434 N 0.812
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.812
Cla005055 Citrullus lanatus Cla005055 N 0.812
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.812
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.812
NGA3 Arabidopsis thaliana AT1G01030 N 0.802
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.802
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.802
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.802
Bo3g001110 Brassica oleracea Bo3g001110 N 0.802
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.802
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.802
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.802
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.802
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.802
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.802
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.802
Cla006845 Citrullus lanatus Cla006845 I 0.802
Bo5g002790 Brassica oleracea Bo5g002790 N 0.802
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.802
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.802
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.792
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.792
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.792
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.792
Bra030497 Brassica rapa Bra030497 N 0.792
Ca_01368 Cicer arietinum Ca_01368 I 0.792
Cla014858 Citrullus lanatus Cla014858 N 0.782
Bra033294 Brassica rapa Bra033294 N 0.782
OB03G11610 Oryza brachyantha OB03G11610 N 0.782
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.782
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.772
Si036864m.g Setaria italica Si036864m.g N 0.772
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.772
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.772
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.772
OBART04G22880 Oryza barthii OBART04G22880 I 0.772
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.772
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.772
OS04G0581400 Oryza sativa OS04G0581400 I 0.772
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.772
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.772
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.772
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.772
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.772
OBART03G01650 Oryza barthii OBART03G01650 N 0.772
OS03G0120900 Oryza sativa OS03G0120900 N 0.772
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.772
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.772
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.772
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.772
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.772
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.762
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.762
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.762
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.762
MDP0000138163 Malus domestica MDP0000138163 N 0.762
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.762
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.762
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.762
Si011823m.g Setaria italica Si011823m.g N 0.762
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.762
OB02G35380 Oryza brachyantha OB02G35380 I 0.762
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.762
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.762
OB10G24100 Oryza brachyantha OB10G24100 N 0.756
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.752
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.752
MDP0000288808 Malus domestica MDP0000288808 N 0.752
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.752
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.752
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.752
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.752
OS02G0683500 Oryza sativa OS02G0683500 N 0.743
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.743
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.743
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.743
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.743
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.743
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.743
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.743
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.743
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.743
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.743
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.743
OBART02G28100 Oryza barthii OBART02G28100 N 0.743
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.743
OBART10G17010 Oryza barthii OBART10G17010 N 0.743
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.743
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.743
OS10G0537100 Oryza sativa OS10G0537100 N 0.743
mgf023686m Mimulus guttatus mgf023686m I 0.733
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.733
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.733
Si020241m.g Setaria italica Si020241m.g N 0.733
Si039972m.g Setaria italica Si039972m.g N 0.733
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.733
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.733
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.723
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.723
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.723
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.723
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.723
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.723
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.723
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.723
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.723
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.723
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.723
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.723
TCM_022729 Theobroma cacao TCM_022729 N 0.723
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.723
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.723
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.713
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.713
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.713
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.713
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.713
MDP0000229742 Malus domestica MDP0000229742 N 0.713
Bra034828 Brassica rapa Bra034828 N 0.713
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.713
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.713
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.713
Bo3g064320 Brassica oleracea Bo3g064320 N 0.713
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.707
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.703
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.703
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.703
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.703
Bra001411 Brassica rapa Bra001411 N 0.703
Bo5g136360 Brassica oleracea Bo5g136360 N 0.703
PK04952.1 Cannabis sativa PK04952.1 I 0.703
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.703
Ca_00826 Cicer arietinum Ca_00826 N 0.703
Ca_25633 Cicer arietinum Ca_25633 I 0.703
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.703
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.703
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.703
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.703
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.703
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.703
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.703
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.701