Pavir.J27608 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.J27608 T023981_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J27608.1.p B3 92 189

Links

Other B3 family TFs
Other Panicum virgatum TFs

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.926
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.916
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.916
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.916
Si011823m.g Setaria italica Si011823m.g N 0.916
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.916
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.916
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.916
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.905
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.905
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.905
OBART04G22880 Oryza barthii OBART04G22880 I 0.905
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.905
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.905
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.905
OS04G0581400 Oryza sativa OS04G0581400 I 0.905
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.905
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.884
Si036864m.g Setaria italica Si036864m.g N 0.884
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.874
OBART03G01650 Oryza barthii OBART03G01650 N 0.874
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.874
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.874
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.874
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.874
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.874
OS03G0120900 Oryza sativa OS03G0120900 N 0.874
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.874
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.874
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.863
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.863
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.863
OB02G35380 Oryza brachyantha OB02G35380 I 0.863
OB03G11610 Oryza brachyantha OB03G11610 N 0.863
OBART02G28100 Oryza barthii OBART02G28100 N 0.863
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.863
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.863
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.863
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.863
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.863
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.863
OS02G0683500 Oryza sativa OS02G0683500 N 0.863
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.863
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.863
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.853
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.853
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.853
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.853
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.853
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.853
F775_04153 Aegilops tauschii F775_04153 N 0.842
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.842
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.842
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.832
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.832
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.832
30076.m004471 Ricinus communis 30076.m004471 I 0.832
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.832
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.821
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.821
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.821
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.821
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.821
TCM_005014 Theobroma cacao TCM_005014 I 0.821
Ca_01368 Cicer arietinum Ca_01368 I 0.821
Pm024248 Prunus mume Pm024248 I 0.821
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.821
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.821
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.821
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.821
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.821
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.821
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.821
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.821
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.821
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.821
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.821
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.821
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.811
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.811
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.811
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.811
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.811
TCM_015590 Theobroma cacao TCM_015590 I 0.811
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.811
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.811
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.811
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.811
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.800
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.800
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.800
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.800
Si020241m.g Setaria italica Si020241m.g N 0.800
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.800
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.800
mgf023769m Mimulus guttatus mgf023769m N 0.800
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.800
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.800
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.792
Si039972m.g Setaria italica Si039972m.g N 0.789
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.789
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.789
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.789
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.789
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.789
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.789
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.789
PK21157.1 Cannabis sativa PK21157.1 I 0.789
GSMUA_Achr4G30170_001 Musa acuminata GSMUA_Achr4G30170_001 N 0.788
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.779
Bra004501 Brassica rapa Bra004501 N 0.779
Bra040478 Brassica rapa Bra040478 I 0.779
OBART10G17010 Oryza barthii OBART10G17010 N 0.779
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.779
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.779
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.779
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.779
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.779
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.779
OS10G0537100 Oryza sativa OS10G0537100 N 0.779
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.779
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.779
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.779
MDP0000288808 Malus domestica MDP0000288808 N 0.779
PK11025.1 Cannabis sativa PK11025.1 I 0.772
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.770
NGA1 Arabidopsis thaliana AT2G46870 N 0.768
Bo4g006900 Brassica oleracea Bo4g006900 N 0.768
Bo4g197410 Brassica oleracea Bo4g197410 I 0.768
Bra000434 Brassica rapa Bra000434 N 0.768
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.768
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.768
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.768
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.768
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.768
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.768
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.768
Cla014858 Citrullus lanatus Cla014858 N 0.768
Pm028725 Prunus mume Pm028725 N 0.768
30068.m002615 Ricinus communis 30068.m002615 I 0.768
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.768
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.768
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.768
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.768
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.762
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.758
NGA3 Arabidopsis thaliana AT1G01030 N 0.758
Bo6g079210 Brassica oleracea Bo6g079210 N 0.758
Bra014415 Brassica rapa Bra014415 N 0.758
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.758
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.758
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.758
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.758
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.758
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.758
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.758
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.758
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.758
Cla006845 Citrullus lanatus Cla006845 I 0.758
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.758
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.758
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.758
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.758
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.758
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.758
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.758
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.758
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.757
OB10G24100 Oryza brachyantha OB10G24100 N 0.756
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.752
Bo4g099000 Brassica oleracea Bo4g099000 N 0.747
Bo5g002790 Brassica oleracea Bo5g002790 N 0.747
Bo8g097490 Brassica oleracea Bo8g097490 N 0.747
Bra007646 Brassica rapa Bra007646 N 0.747
LPERR07G08550 Leersia perrieri LPERR07G08550 N 0.747
OB05G32250 Oryza brachyantha OB05G32250 I 0.747
OPUNC07G09160 Oryza punctata OPUNC07G09160 N 0.747
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.747
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.747
Bo3g039420 Brassica oleracea Bo3g039420 N 0.743
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.737
NGA2 Arabidopsis thaliana AT3G61970 N 0.737
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.737
Bra030497 Brassica rapa Bra030497 N 0.737
OBART12G03490 Oryza barthii OBART12G03490 N 0.737
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.737
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.737
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.737
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.737
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.737
Cla005055 Citrullus lanatus Cla005055 N 0.737
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.737
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.737
MDP0000138163 Malus domestica MDP0000138163 N 0.737
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.735
ARF31 Arabidopsis thaliana AT2G36080 N 0.726
Bo3g001110 Brassica oleracea Bo3g001110 N 0.726
Bra033294 Brassica rapa Bra033294 N 0.726
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.726
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.726
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.726
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.726
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.726
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.726
Cla017937 Citrullus lanatus Cla017937 I 0.726
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.726
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.726
mgf018965m Mimulus guttatus mgf018965m N 0.726
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.726
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.726
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.726
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.726
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.726
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.726
PK04952.1 Cannabis sativa PK04952.1 I 0.726
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.716
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.716
Bo01079s020 Brassica oleracea Bo01079s020 N 0.716
Bo4g035110 Brassica oleracea Bo4g035110 N 0.716
Bo9g176470 Brassica oleracea Bo9g176470 N 0.716
Bra005301 Brassica rapa Bra005301 N 0.716
Bra017262 Brassica rapa Bra017262 N 0.716
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.716
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.716
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.716
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.716
OB12G13420 Oryza brachyantha OB12G13420 N 0.716
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.716
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.716
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.716
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.716
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.716
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.716
TCM_022729 Theobroma cacao TCM_022729 N 0.716
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.716
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.716
Ca_25633 Cicer arietinum Ca_25633 I 0.716
mgf019085m Mimulus guttatus mgf019085m N 0.716
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.716
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.716
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.716
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.716
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.716
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.716
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.716
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.716
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.716
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.716
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.716
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.705
BRADI3G32140 Brachypodium distachyon BRADI3G32140 N 0.705
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.705
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.705
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.705
OB01G12610 Oryza brachyantha OB01G12610 I 0.705
OB01G36520 Oryza brachyantha OB01G36520 I 0.705
OB04G29740 Oryza brachyantha OB04G29740 I 0.705
OBART01G02620 Oryza barthii OBART01G02620 I 0.705
OBART11G03590 Oryza barthii OBART11G03590 N 0.705
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.705
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.705
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.705
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.705
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.705
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.705
OS11G0156000 Oryza sativa OS11G0156000 N 0.705
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.705
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.705
NGA4 Arabidopsis lyrata scaffold_604140.1 I 0.705
Si027632m.g Setaria italica Si027632m.g N 0.705
Ca_00826 Cicer arietinum Ca_00826 N 0.705
30032.m000462 Ricinus communis 30032.m000462 N 0.705
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.705
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.705
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.705
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.705
MDP0000229742 Malus domestica MDP0000229742 N 0.705
Pavir.Fb00403 Panicum virgatum Pavir.Fb00403 N 0.705
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.705
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.705
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.703