Gorai.002G237900 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.002G237900 T023304_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G237900.1 B3 38 146

Links

Other B3 family TFs
Other Gossypium raimondii TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_022729 Theobroma cacao TCM_022729 N 0.919
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.899
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.899
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.881
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.851
30032.m000462 Ricinus communis 30032.m000462 N 0.851
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.851
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.851
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.842
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.842
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.842
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.842
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.842
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.842
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.842
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.832
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.832
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.832
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.832
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.828
Bo4g035110 Brassica oleracea Bo4g035110 N 0.822
Bra005301 Brassica rapa Bra005301 N 0.822
Ca_25633 Cicer arietinum Ca_25633 I 0.822
PK04952.1 Cannabis sativa PK04952.1 I 0.822
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.812
Bo01079s020 Brassica oleracea Bo01079s020 N 0.812
Bra017262 Brassica rapa Bra017262 N 0.812
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.812
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.812
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.812
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.812
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.812
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.812
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.812
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.812
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.812
ARF31 Arabidopsis thaliana AT2G36080 N 0.802
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.802
Bo3g003800 Brassica oleracea Bo3g003800 N 0.802
Bra001411 Brassica rapa Bra001411 N 0.802
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.802
Ca_00826 Cicer arietinum Ca_00826 N 0.802
mgf019085m Mimulus guttatus mgf019085m N 0.802
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.802
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.802
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.802
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.802
MDP0000229742 Malus domestica MDP0000229742 N 0.802
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.802
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.802
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.802
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.798
Bo3g064320 Brassica oleracea Bo3g064320 N 0.792
Bra005886 Brassica rapa Bra005886 N 0.792
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.792
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.792
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.792
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.792
Cla017937 Citrullus lanatus Cla017937 I 0.792
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.792
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.792
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.792
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.792
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.788
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.788
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.786
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.786
Bo5g136360 Brassica oleracea Bo5g136360 N 0.782
Bo9g176470 Brassica oleracea Bo9g176470 N 0.782
Bra034828 Brassica rapa Bra034828 N 0.782
OB12G13420 Oryza brachyantha OB12G13420 N 0.782
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.782
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.782
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.778
Bra041023 Brassica rapa Bra041023 N 0.772
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.772
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.772
Si027632m.g Setaria italica Si027632m.g N 0.772
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.772
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.772
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.772
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.762
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.762
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.762
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.762
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.762
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.762
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.759
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.752
F775_02500 Aegilops tauschii F775_02500 N 0.752
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.752
OBART11G03590 Oryza barthii OBART11G03590 N 0.752
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.752
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.752
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.752
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.752
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.752
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.752
OS11G0156000 Oryza sativa OS11G0156000 N 0.752
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.752
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.752
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.752
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.752
PK11025.1 Cannabis sativa PK11025.1 I 0.752
mgf018965m Mimulus guttatus mgf018965m N 0.747
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.745
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.743
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.743
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.743
OB03G11610 Oryza brachyantha OB03G11610 N 0.743
OB11G12920 Oryza brachyantha OB11G12920 N 0.743
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.743
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.743
TCM_005014 Theobroma cacao TCM_005014 I 0.743
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.743
Pm024248 Prunus mume Pm024248 I 0.743
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.743
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.743
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.742
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.733
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.733
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.733
Bo6g079210 Brassica oleracea Bo6g079210 N 0.733
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.733
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.733
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.733
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.733
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.733
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.733
OBART03G01650 Oryza barthii OBART03G01650 N 0.733
OBART04G22880 Oryza barthii OBART04G22880 I 0.733
OBART12G03490 Oryza barthii OBART12G03490 N 0.733
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.733
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.733
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.733
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.733
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.733
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.733
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.733
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.733
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.733
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.733
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.733
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.733
OS03G0120900 Oryza sativa OS03G0120900 N 0.733
OS04G0581400 Oryza sativa OS04G0581400 I 0.733
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.733
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.733
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.733
Si036864m.g Setaria italica Si036864m.g N 0.733
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.733
TCM_015590 Theobroma cacao TCM_015590 I 0.733
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.733
30076.m004471 Ricinus communis 30076.m004471 I 0.733
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.733
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.733
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.733
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.733
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.733
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.733
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.733
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.733
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.727
Bra040478 Brassica rapa Bra040478 I 0.723
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.723
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.723
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.723
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.723
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.723
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.723
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.723
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.723
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.723
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.723
Si011823m.g Setaria italica Si011823m.g N 0.723
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.723
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.723
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.723
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.723
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.723
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.723
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.723
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.723
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.723
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.723
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.723
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.723
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.723
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.723
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.723
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.720
Traes_2AL_25382F498 Triticum aestivum Traes_2AL_25382F498 N 0.717
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.716
NGA1 Arabidopsis thaliana AT2G46870 N 0.713
Bo3g039420 Brassica oleracea Bo3g039420 N 0.713
Bo4g197410 Brassica oleracea Bo4g197410 I 0.713
F775_31255 Aegilops tauschii F775_31255 N 0.713
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.713
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.713
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.713
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.713
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.713
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.713
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.713
OB02G35380 Oryza brachyantha OB02G35380 I 0.713
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.713
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.713
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.713
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.713
Ca_01368 Cicer arietinum Ca_01368 I 0.713
Cla006845 Citrullus lanatus Cla006845 I 0.713
mgf023769m Mimulus guttatus mgf023769m N 0.713
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.713
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.713
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.713
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.713
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.713
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.713
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.713
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.713
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.713
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.713
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.707
Cla014858 Citrullus lanatus Cla014858 N 0.707
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.704
NGA2 Arabidopsis thaliana AT3G61970 N 0.703
Bo4g006900 Brassica oleracea Bo4g006900 N 0.703
Bo8g097490 Brassica oleracea Bo8g097490 N 0.703
Bra000434 Brassica rapa Bra000434 N 0.703
Bra003482 Brassica rapa Bra003482 N 0.703
Bra004501 Brassica rapa Bra004501 N 0.703
Bra007646 Brassica rapa Bra007646 N 0.703
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.703
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.703
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.703
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.703
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.703
Si010849m.g Setaria italica Si010849m.g N 0.703
Si039972m.g Setaria italica Si039972m.g N 0.703
30068.m002615 Ricinus communis 30068.m002615 I 0.703
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.703
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.703
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.703
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.703
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.703
PK21157.1 Cannabis sativa PK21157.1 I 0.703
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.700