Bra005886 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra005886 T018792_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005886.1-P B3 49 156

Links

Other B3 family TFs
Other Brassica rapa TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g003800 Brassica oleracea Bo3g003800 N 0.970
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.941
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.911
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.911
Bo9g176470 Brassica oleracea Bo9g176470 N 0.901
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.901
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.891
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.891
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.871
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.871
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.871
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.871
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.871
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.871
Bra001411 Brassica rapa Bra001411 N 0.861
Bo3g064320 Brassica oleracea Bo3g064320 N 0.851
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.851
Ca_25633 Cicer arietinum Ca_25633 I 0.848
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.848
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.848
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.848
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.842
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.832
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.832
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.832
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.832
TCM_022729 Theobroma cacao TCM_022729 N 0.828
Bo5g136360 Brassica oleracea Bo5g136360 N 0.822
Bra034828 Brassica rapa Bra034828 N 0.822
Bra041023 Brassica rapa Bra041023 N 0.822
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.822
30032.m000462 Ricinus communis 30032.m000462 N 0.822
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.822
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.822
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.821
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.812
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.812
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.812
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.812
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.808
PK04952.1 Cannabis sativa PK04952.1 I 0.808
ARF31 Arabidopsis thaliana AT2G36080 N 0.802
Bo01079s020 Brassica oleracea Bo01079s020 N 0.802
Bra017262 Brassica rapa Bra017262 N 0.802
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.802
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.802
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.802
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.802
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.797
Bo4g035110 Brassica oleracea Bo4g035110 N 0.792
Bra005301 Brassica rapa Bra005301 N 0.792
OB04G29740 Oryza brachyantha OB04G29740 I 0.792
OB12G13420 Oryza brachyantha OB12G13420 N 0.792
Ca_00826 Cicer arietinum Ca_00826 N 0.792
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.792
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.792
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.792
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.792
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.792
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.792
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.786
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.782
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.782
Bra009171 Brassica rapa Bra009171 N 0.776
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.772
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.772
Cla017937 Citrullus lanatus Cla017937 I 0.772
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.772
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.768
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.768
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.768
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.768
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.768
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.762
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.762
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.762
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.762
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.762
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.762
mgf019085m Mimulus guttatus mgf019085m N 0.762
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.762
MDP0000229742 Malus domestica MDP0000229742 N 0.762
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.759
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.757
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.752
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.752
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.752
OBART11G03590 Oryza barthii OBART11G03590 N 0.752
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.752
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.752
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.752
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.752
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.752
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.752
OS11G0156000 Oryza sativa OS11G0156000 N 0.752
Si027632m.g Setaria italica Si027632m.g N 0.752
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.752
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.752
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.752
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.747
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.743
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.743
OB11G12920 Oryza brachyantha OB11G12920 N 0.743
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.743
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.743
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.742
mgf018965m Mimulus guttatus mgf018965m N 0.737
F775_02500 Aegilops tauschii F775_02500 N 0.733
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.733
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.733
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.733
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.733
F775_31255 Aegilops tauschii F775_31255 N 0.731
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.731
MLOC_48938 Hordeum vulgare MLOC_48938 N 0.727
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.723
Si036864m.g Setaria italica Si036864m.g N 0.723
TCM_015590 Theobroma cacao TCM_015590 I 0.723
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.723
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.723
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.723
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.723
PK11025.1 Cannabis sativa PK11025.1 I 0.723
Bra040478 Brassica rapa Bra040478 I 0.720
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.717
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.714
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.714
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.713
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.713
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.713
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.713
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.713
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.713
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.713
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.713
OB03G11610 Oryza brachyantha OB03G11610 N 0.713
OBART03G01650 Oryza barthii OBART03G01650 N 0.713
OBART04G22880 Oryza barthii OBART04G22880 I 0.713
OBART12G03490 Oryza barthii OBART12G03490 N 0.713
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.713
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.713
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.713
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.713
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.713
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.713
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.713
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.713
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.713
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.713
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.713
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.713
OS03G0120900 Oryza sativa OS03G0120900 N 0.713
OS04G0581400 Oryza sativa OS04G0581400 I 0.713
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.713
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.713
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.713
Si011823m.g Setaria italica Si011823m.g N 0.713
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.713
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.713
TCM_005014 Theobroma cacao TCM_005014 I 0.713
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.713
Pm024248 Prunus mume Pm024248 I 0.713
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.713
mgf023769m Mimulus guttatus mgf023769m N 0.713
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.713
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.713
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.713
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.713
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.713
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.713
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.713
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.713
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.713
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.713
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.713
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.713
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.710
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.710
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.707
Cla014858 Citrullus lanatus Cla014858 N 0.707
NGA1 Arabidopsis thaliana AT2G46870 N 0.703
Bo4g006900 Brassica oleracea Bo4g006900 N 0.703
Bo6g079210 Brassica oleracea Bo6g079210 N 0.703
Bra003482 Brassica rapa Bra003482 N 0.703
Bra004501 Brassica rapa Bra004501 N 0.703
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.703
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.703
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.703
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.703
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.703
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.703
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.703
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.703
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.703
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.703
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.703
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.703
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.703
30068.m002615 Ricinus communis 30068.m002615 I 0.703
30076.m004471 Ricinus communis 30076.m004471 I 0.703
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.703
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.703
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.703
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.703
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.703
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.703
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.703
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.703
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.703
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.703
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.703
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.703
Bo4g197410 Brassica oleracea Bo4g197410 I 0.700