Pavir.Ha01761 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Ha01761 T023890_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ha01761.1.p B3 34 139

Links

Other B3 family TFs
Other Panicum virgatum TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.990
Si027632m.g Setaria italica Si027632m.g N 0.951
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.941
OB12G13420 Oryza brachyantha OB12G13420 N 0.881
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.881
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.871
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.871
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.861
OBART11G03590 Oryza barthii OBART11G03590 N 0.861
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.861
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.861
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.861
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.861
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.861
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.861
OS11G0156000 Oryza sativa OS11G0156000 N 0.861
F775_02500 Aegilops tauschii F775_02500 N 0.851
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.851
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.851
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.851
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.851
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.851
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.851
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.848
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.842
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.842
OB11G12920 Oryza brachyantha OB11G12920 N 0.842
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.842
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.842
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.842
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.832
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.832
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.832
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.822
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.822
OBART12G03490 Oryza barthii OBART12G03490 N 0.822
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.822
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.822
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.822
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.822
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.822
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.822
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.812
Si010849m.g Setaria italica Si010849m.g N 0.812
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.812
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.812
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.812
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.812
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.802
LPERR11G03050 Leersia perrieri LPERR11G03050 N 0.802
30032.m000462 Ricinus communis 30032.m000462 N 0.802
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.802
Bo01079s020 Brassica oleracea Bo01079s020 N 0.792
Bra017262 Brassica rapa Bra017262 N 0.792
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.792
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.792
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.792
Cla017937 Citrullus lanatus Cla017937 I 0.792
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.792
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.792
PK04952.1 Cannabis sativa PK04952.1 I 0.792
ARF31 Arabidopsis thaliana AT2G36080 N 0.782
Bo4g035110 Brassica oleracea Bo4g035110 N 0.782
Bra005301 Brassica rapa Bra005301 N 0.782
F775_31255 Aegilops tauschii F775_31255 N 0.782
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.782
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.782
Ca_25633 Cicer arietinum Ca_25633 I 0.782
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.782
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.782
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.782
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.782
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.782
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.772
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.772
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.772
TCM_022729 Theobroma cacao TCM_022729 N 0.772
Ca_00826 Cicer arietinum Ca_00826 N 0.772
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.772
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.772
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.772
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.772
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.762
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.762
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.762
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.762
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.762
mgf019085m Mimulus guttatus mgf019085m N 0.762
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.762
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.762
Bo5g136360 Brassica oleracea Bo5g136360 N 0.752
Bra034828 Brassica rapa Bra034828 N 0.752
Traes_2AL_25382F498 Triticum aestivum Traes_2AL_25382F498 N 0.752
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.752
MDP0000229742 Malus domestica MDP0000229742 N 0.752
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.752
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.743
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.743
Bo3g003800 Brassica oleracea Bo3g003800 N 0.743
Bo9g176470 Brassica oleracea Bo9g176470 N 0.743
Bra005886 Brassica rapa Bra005886 N 0.743
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.743
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.743
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.743
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.743
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.743
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.743
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.743
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.743
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.743
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.743
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.735
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.733
Bo3g064320 Brassica oleracea Bo3g064320 N 0.733
Bra001411 Brassica rapa Bra001411 N 0.733
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.733
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.733
OB03G11610 Oryza brachyantha OB03G11610 N 0.733
OBART03G01650 Oryza barthii OBART03G01650 N 0.733
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.733
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.733
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.733
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.733
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.733
OS03G0120900 Oryza sativa OS03G0120900 N 0.733
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.733
mgf018965m Mimulus guttatus mgf018965m N 0.733
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.733
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.733
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.733
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.733
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.723
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.723
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.723
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.723
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.723
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.723
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.723
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.723
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.723
Si011823m.g Setaria italica Si011823m.g N 0.723
Si036864m.g Setaria italica Si036864m.g N 0.723
TCM_005014 Theobroma cacao TCM_005014 I 0.723
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.723
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.723
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.723
Pm024248 Prunus mume Pm024248 I 0.723
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.723
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.723
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.723
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.723
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.723
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.723
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.723
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.723
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.713
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.713
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.713
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.713
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.713
OBART10G17010 Oryza barthii OBART10G17010 N 0.713
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.713
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.713
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.713
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.713
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.713
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.713
OS10G0537100 Oryza sativa OS10G0537100 N 0.713
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.713
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.713
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.713
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.713
TCM_015590 Theobroma cacao TCM_015590 I 0.713
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.713
Pm028725 Prunus mume Pm028725 N 0.713
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.713
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.713
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.713
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.713
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.713
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.713
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.703
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.703
Bra040478 Brassica rapa Bra040478 I 0.703
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.703
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.703
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.703
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.703
OB02G35380 Oryza brachyantha OB02G35380 I 0.703
OBART04G22880 Oryza barthii OBART04G22880 I 0.703
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.703
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.703
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.703
OS04G0581400 Oryza sativa OS04G0581400 I 0.703
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.703
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.703
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.703
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.703
Si039972m.g Setaria italica Si039972m.g N 0.703
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.703
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.703
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.703
30076.m004471 Ricinus communis 30076.m004471 I 0.703
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.703
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.703
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.703
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.703
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.703
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.703
MDP0000138163 Malus domestica MDP0000138163 N 0.703
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.703
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.703
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.703
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.703
PK11025.1 Cannabis sativa PK11025.1 I 0.703
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.703